HLTF_HUMAN.H11MO.0.D motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

HLTF
(GeneCards)

Model

HLTF_HUMAN.H11MO.0.D

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

Integrative

Model release

HOCOMOCOv9

Model length

12

Quality

D

Motif rank

0

Consensus

nAnGKCWGCAAM

Best auROC (human)

Best auROC (mouse)

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

Aligned words

10

TF family

TF subfamily

HGNC

EntrezGene

GeneID:6596
(SSTAR profile)

UniProt ID

UniProt AC

Q14527
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	5.3142700000000005
0.0005	5.92153
0.0001	7.11768

GTEx tissue expression atlas

HLTF expression

ReMap ChIP-seq dataset list

Motifs in JASPAR

MA0109.1 (HLTF; Oryctolagus cuniculus)

PCM

	A	C	G	T
01	1.5	1.5	3.389	3.611
02	6.778	0.0	3.222	0.0
03	3.0	1.778	3.222	2.0
04	0.0	0.0	6.222	3.778
05	1.0	0.0	6.111	2.889
06	2.889	7.111	0.0	0.0
07	2.0	0.889	0.0	7.111
08	0.0	0.889	9.111	0.0
09	0.0	5.889	4.111	0.0
10	6.111	3.889	0.0	0.0
11	9.0	0.0	0.0	1.0
12	5.389	3.611	0.5	0.5

PWM

	A	C	G	T
01	-0.393	-0.393	0.254	0.308
02	0.872	-1.676	0.211	-1.676
03	0.151	-0.268	0.211	-0.177
04	-1.676	-1.676	0.793	0.347
05	-0.669	-1.676	0.777	0.119
06	0.119	0.916	-1.676	-1.676
07	-0.177	-0.742	-1.676	0.916
08	-1.676	-0.742	1.147	-1.676
09	-1.676	0.743	0.421	-1.676
10	0.777	0.373	-1.676	-1.676
11	1.136	-1.676	-1.676	-0.669
12	0.662	0.308	-1.051	-1.051