Model info
| Transcription factor | Hltf | ||||||||
| Model | HLTF_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 12 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nAnGKCWGCAAM | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 10 | ||||||||
| TF family | |||||||||
| TF subfamily | |||||||||
| MGI | MGI:1196437 | ||||||||
| EntrezGene | GeneID:20585 (SSTAR profile) | ||||||||
| UniProt ID | HLTF_MOUSE | ||||||||
| UniProt AC | Q6PCN7 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Hltf expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.5 | 1.5 | 3.389 | 3.611 |
| 02 | 6.778 | 0.0 | 3.222 | 0.0 |
| 03 | 3.0 | 1.778 | 3.222 | 2.0 |
| 04 | 0.0 | 0.0 | 6.222 | 3.778 |
| 05 | 1.0 | 0.0 | 6.111 | 2.889 |
| 06 | 2.889 | 7.111 | 0.0 | 0.0 |
| 07 | 2.0 | 0.889 | 0.0 | 7.111 |
| 08 | 0.0 | 0.889 | 9.111 | 0.0 |
| 09 | 0.0 | 5.889 | 4.111 | 0.0 |
| 10 | 6.111 | 3.889 | 0.0 | 0.0 |
| 11 | 9.0 | 0.0 | 0.0 | 1.0 |
| 12 | 5.389 | 3.611 | 0.5 | 0.5 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.393 | -0.393 | 0.254 | 0.308 |
| 02 | 0.872 | -1.676 | 0.211 | -1.676 |
| 03 | 0.151 | -0.268 | 0.211 | -0.177 |
| 04 | -1.676 | -1.676 | 0.793 | 0.347 |
| 05 | -0.669 | -1.676 | 0.777 | 0.119 |
| 06 | 0.119 | 0.916 | -1.676 | -1.676 |
| 07 | -0.177 | -0.742 | -1.676 | 0.916 |
| 08 | -1.676 | -0.742 | 1.147 | -1.676 |
| 09 | -1.676 | 0.743 | 0.421 | -1.676 |
| 10 | 0.777 | 0.373 | -1.676 | -1.676 |
| 11 | 1.136 | -1.676 | -1.676 | -0.669 |
| 12 | 0.662 | 0.308 | -1.051 | -1.051 |