Model info
| Transcription factor | HMBOX1 (GeneCards) | ||||||||
| Model | HMBX1_HUMAN.H11DI.0.D | ||||||||
| Model type | Dinucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dvYTAGTYAn | ||||||||
| Best auROC (human) | 0.776 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 7 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 579 | ||||||||
| TF family | POU domain factors {3.1.10} | ||||||||
| TF subfamily | HNF1-like factors {3.1.10.7} | ||||||||
| HGNC | HGNC:26137 | ||||||||
| EntrezGene | GeneID:79618 (SSTAR profile) | ||||||||
| UniProt ID | HMBX1_HUMAN | ||||||||
| UniProt AC | Q6NT76 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | HMBOX1 expression | ||||||||
| ReMap ChIP-seq dataset list | HMBOX1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 58.0 | 31.0 | 88.0 | 8.0 | 37.0 | 9.0 | 10.0 | 3.0 | 53.0 | 19.0 | 62.0 | 2.0 | 44.0 | 5.0 | 42.0 | 18.0 |
| 02 | 1.0 | 145.0 | 2.0 | 44.0 | 0.0 | 44.0 | 2.0 | 18.0 | 1.0 | 101.0 | 1.0 | 99.0 | 0.0 | 22.0 | 0.0 | 9.0 |
| 03 | 0.0 | 0.0 | 1.0 | 1.0 | 2.0 | 2.0 | 12.0 | 296.0 | 0.0 | 0.0 | 1.0 | 4.0 | 1.0 | 0.0 | 36.0 | 133.0 |
| 04 | 3.0 | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 | 0.0 | 0.0 | 42.0 | 0.0 | 8.0 | 0.0 | 317.0 | 0.0 | 115.0 | 2.0 |
| 05 | 0.0 | 1.0 | 363.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 123.0 | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.25 | 0.25 | 0.25 | 487.25 | 0.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.063 | 0.063 | 0.063 | 0.063 | 0.063 | 0.063 | 0.063 | 0.063 | 0.063 | 0.063 | 0.063 | 0.063 | 22.063 | 217.063 | 3.063 | 246.062 |
| 08 | 22.063 | 0.063 | 0.063 | 0.063 | 195.063 | 4.063 | 6.063 | 12.063 | 3.063 | 0.063 | 0.063 | 0.063 | 186.062 | 2.063 | 23.063 | 35.063 |
| 09 | 93.063 | 96.063 | 99.063 | 118.063 | 2.063 | 1.063 | 0.063 | 3.063 | 9.063 | 3.063 | 4.063 | 13.063 | 34.063 | 2.063 | 4.063 | 7.063 |
PWM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 0.635 | 0.014 | 1.049 | -1.306 | 0.189 | -1.193 | -1.092 | -2.212 | 0.545 | -0.468 | 0.701 | -2.562 | 0.361 | -1.748 | 0.314 | -0.521 |
| 02 | -3.105 | 1.547 | -2.562 | 0.361 | -4.382 | 0.361 | -2.562 | -0.521 | -3.105 | 1.187 | -3.105 | 1.167 | -4.382 | -0.324 | -4.382 | -1.193 |
| 03 | -4.382 | -4.382 | -3.105 | -3.105 | -2.562 | -2.562 | -0.916 | 2.259 | -4.382 | -4.382 | -3.105 | -1.954 | -3.105 | -4.382 | 0.162 | 1.461 |
| 04 | -2.212 | -4.382 | -4.382 | -4.382 | -2.562 | -4.382 | -4.382 | -4.382 | 0.314 | -4.382 | -1.306 | -4.382 | 2.328 | -4.382 | 1.316 | -2.562 |
| 05 | -4.382 | -3.105 | 2.463 | -4.382 | -4.382 | -4.382 | -4.382 | -4.382 | -4.382 | -4.382 | 1.383 | -4.382 | -4.382 | -4.382 | -2.562 | -4.382 |
| 06 | -4.382 | -4.382 | -4.382 | -4.382 | -4.382 | -4.382 | -4.382 | -3.105 | -3.883 | -3.883 | -3.883 | 2.757 | -4.382 | -4.382 | -4.382 | -4.382 |
| 07 | -4.232 | -4.232 | -4.232 | -4.232 | -4.232 | -4.232 | -4.232 | -4.232 | -4.232 | -4.232 | -4.232 | -4.232 | -0.321 | 1.95 | -2.194 | 2.075 |
| 08 | -0.321 | -4.232 | -4.232 | -4.232 | 1.843 | -1.94 | -1.568 | -0.911 | -2.194 | -4.232 | -4.232 | -4.232 | 1.796 | -2.536 | -0.278 | 0.136 |
| 09 | 1.105 | 1.137 | 1.167 | 1.342 | -2.536 | -3.061 | -4.232 | -2.194 | -1.186 | -2.194 | -1.94 | -0.833 | 0.107 | -2.536 | -1.94 | -1.424 |