Model info
| Transcription factor | HMBOX1 (GeneCards) | ||||||||
| Model | HMBX1_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dRYTRGTbA | ||||||||
| Best auROC (human) | 0.76 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 7 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 500 | ||||||||
| TF family | POU domain factors {3.1.10} | ||||||||
| TF subfamily | HNF1-like factors {3.1.10.7} | ||||||||
| HGNC | HGNC:26137 | ||||||||
| EntrezGene | GeneID:79618 (SSTAR profile) | ||||||||
| UniProt ID | HMBX1_HUMAN | ||||||||
| UniProt AC | Q6NT76 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | HMBOX1 expression | ||||||||
| ReMap ChIP-seq dataset list | HMBOX1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 201.0 | 14.0 | 200.0 | 85.0 |
| 02 | 164.0 | 59.0 | 260.0 | 17.0 |
| 03 | 8.0 | 338.0 | 14.0 | 140.0 |
| 04 | 4.0 | 12.0 | 7.0 | 477.0 |
| 05 | 330.0 | 1.0 | 158.0 | 11.0 |
| 06 | 0.0 | 6.0 | 493.0 | 1.0 |
| 07 | 9.25 | 2.25 | 5.25 | 483.25 |
| 08 | 48.25 | 163.25 | 54.25 | 234.25 |
| 09 | 405.25 | 5.25 | 15.25 | 74.25 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.47 | -2.096 | 0.465 | -0.38 |
| 02 | 0.269 | -0.737 | 0.726 | -1.92 |
| 03 | -2.584 | 0.987 | -2.096 | 0.112 |
| 04 | -3.126 | -2.234 | -2.694 | 1.33 |
| 05 | 0.963 | -3.903 | 0.232 | -2.311 |
| 06 | -4.4 | -2.819 | 1.363 | -3.903 |
| 07 | -2.461 | -3.505 | -2.923 | 1.343 |
| 08 | -0.933 | 0.264 | -0.819 | 0.622 |
| 09 | 1.168 | -2.923 | -2.019 | -0.513 |