Model info
| Transcription factor | HMGA1 (GeneCards) | ||||||||
| Model | HMGA1_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 7 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nWATTWd | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 97 | ||||||||
| TF family | HMGA factors {8.2.1} | ||||||||
| TF subfamily | HMGA1 (HMGI(Y)) {8.2.1.0.1} | ||||||||
| HGNC | HGNC:5010 | ||||||||
| EntrezGene | GeneID:3159 (SSTAR profile) | ||||||||
| UniProt ID | HMGA1_HUMAN | ||||||||
| UniProt AC | P17096 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | HMGA1 expression | ||||||||
| ReMap ChIP-seq dataset list | HMGA1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 24.571 | 17.019 | 33.417 | 19.284 |
| 02 | 29.884 | 7.876 | 0.0 | 56.531 |
| 03 | 79.942 | 3.776 | 0.0 | 10.573 |
| 04 | 0.0 | 0.0 | 0.0 | 94.29 |
| 05 | 1.942 | 0.971 | 0.0 | 91.378 |
| 06 | 22.548 | 5.826 | 8.846 | 57.071 |
| 07 | 19.338 | 10.6 | 11.031 | 53.322 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.04 | -0.308 | 0.335 | -0.191 |
| 02 | 0.227 | -1.009 | -3.079 | 0.848 |
| 03 | 1.188 | -1.615 | -3.079 | -0.747 |
| 04 | -3.079 | -3.079 | -3.079 | 1.351 |
| 05 | -2.083 | -2.462 | -3.079 | 1.32 |
| 06 | -0.042 | -1.267 | -0.906 | 0.857 |
| 07 | -0.188 | -0.744 | -0.708 | 0.79 |