Transcription factor | Hmga1 | ||||||||
Model | HMGA1_MOUSE.H11MO.0.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | Integrative | ||||||||
Model release | HOCOMOCOv9 | ||||||||
Model length | 7 | ||||||||
Quality | D | ||||||||
Motif rank | 0 | ||||||||
Consensus | nWATTWd | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 97 | ||||||||
TF family | HMGA factors {8.2.1} | ||||||||
TF subfamily | HMGA1 (HMGI(Y)) {8.2.1.0.1} | ||||||||
MGI | MGI:96160 | ||||||||
EntrezGene | GeneID:111241; 15361 (SSTAR profile) | ||||||||
UniProt ID | HMGA1_MOUSE | ||||||||
UniProt AC | P17095 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Hmga1 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 24.571 | 17.019 | 33.417 | 19.284 |
02 | 29.884 | 7.876 | 0.0 | 56.531 |
03 | 79.942 | 3.776 | 0.0 | 10.573 |
04 | 0.0 | 0.0 | 0.0 | 94.29 |
05 | 1.942 | 0.971 | 0.0 | 91.378 |
06 | 22.548 | 5.826 | 8.846 | 57.071 |
07 | 19.338 | 10.6 | 11.031 | 53.322 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.04 | -0.308 | 0.335 | -0.191 |
02 | 0.227 | -1.009 | -3.079 | 0.848 |
03 | 1.188 | -1.615 | -3.079 | -0.747 |
04 | -3.079 | -3.079 | -3.079 | 1.351 |
05 | -2.083 | -2.462 | -3.079 | 1.32 |
06 | -0.042 | -1.267 | -0.906 | 0.857 |
07 | -0.188 | -0.744 | -0.708 | 0.79 |