We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHmga1
ModelHMGA1_MOUSE.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length7
Quality
D
Motif rank
0
ConsensusnWATTWd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words97
TF familyHMGA factors {8.2.1}
TF subfamilyHMGA1 (HMGI(Y)) {8.2.1.0.1}
MGIMGI:96160
EntrezGeneGeneID:111241; 15361
(SSTAR profile)
UniProt IDHMGA1_MOUSE
UniProt ACP17095
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.5300899999999995
0.0005 6.063829999999999
0.0001 6.3052
GTEx tissue expression atlas Hmga1 expression
Motifs in JASPAR
PCM
ACGT
0124.57117.01933.41719.284
0229.8847.8760.056.531
0379.9423.7760.010.573
040.00.00.094.29
051.9420.9710.091.378
0622.5485.8268.84657.071
0719.33810.611.03153.322
PWM
ACGT
010.04-0.3080.335-0.191
020.227-1.009-3.0790.848
031.188-1.615-3.079-0.747
04-3.079-3.079-3.0791.351
05-2.083-2.462-3.0791.32
06-0.042-1.267-0.9060.857
07-0.188-0.744-0.7080.79