We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHMGA2
(GeneCards)
ModelHMGA2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length15
Quality
D
Motif rank
0
ConsensusAATAWhSSSSAATAT
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words75
TF familyHMGA factors {8.2.1}
TF subfamilyHMGA2 (HMGI-C) {8.2.1.0.2}
HGNCHGNC:5009
EntrezGeneGeneID:8091
(SSTAR profile)
UniProt IDHMGA2_HUMAN
UniProt ACP52926
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.18141
0.0005 5.21481
0.0001 7.3510100000000005
GTEx tissue expression atlas HMGA2 expression
ReMap ChIP-seq dataset list HMGA2 datasets
Motifs in JASPAR
PCM
ACGT
0171.7521.2411.2411.241
0254.6210.00.020.855
0311.9170.00.063.559
0444.690.00.030.786
0539.7241.9860.99332.772
0612.9120.8558.93832.772
070.041.7129.7933.972
081.98624.82846.6761.986
090.037.73832.7724.966
101.98631.77940.7170.993
1171.5030.02.9790.993
1259.5860.9930.014.897
131.9860.9930.072.497
1459.5860.00.99314.897
151.491.491.4971.007
PWM
ACGT
011.295-2.151-2.151-2.151
021.027-2.915-2.9150.095
03-0.428-2.915-2.9151.176
040.83-2.915-2.9150.468
050.716-1.872-2.2640.529
06-0.3550.095-0.6890.529
07-2.9150.7630.437-1.373
08-1.8720.2610.873-1.872
09-2.9150.6660.529-1.194
10-1.8720.4990.74-2.264
111.292-2.915-1.592-2.264
121.112-2.264-2.915-0.222
13-1.872-2.264-2.9151.305
141.112-2.915-2.264-0.222
15-2.049-2.049-2.0491.285