We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHMX1
(GeneCards)
ModelHMX1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length17
Quality
D
Motif rank
0
ConsensusdYTAATTGnYnnWTWAK
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words34
TF familyNK-related factors {3.1.2}
TF subfamilyNK-5/HMX {3.1.2.18}
HGNCHGNC:5017
EntrezGeneGeneID:3166
(SSTAR profile)
UniProt IDHMX1_HUMAN
UniProt ACQ9NP08
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.4295599999999995
0.0005 6.39976
0.0001 8.43506
GTEx tissue expression atlas HMX1 expression
ReMap ChIP-seq dataset list HMX1 datasets
Motifs in JASPAR
PCM
ACGT
016.754.7511.7510.75
024.256.252.2521.25
030.06.00.028.0
0434.00.00.00.0
0534.00.00.00.0
060.00.05.029.0
070.00.00.034.0
085.00.029.00.0
0910.011.02.011.0
102.04.02.026.0
117.07.02.018.0
125.06.06.017.0
134.03.01.026.0
143.250.250.2530.25
1525.50.53.54.5
1628.50.50.54.5
172.01.08.023.0
PWM
ACGT
01-0.206-0.510.2970.215
02-0.603-0.274-1.0970.858
03-2.365-0.31-2.3651.124
041.313-2.365-2.365-2.365
051.313-2.365-2.365-2.365
06-2.365-2.365-0.4671.158
07-2.365-2.365-2.3651.313
08-0.467-2.3651.158-2.365
090.1480.236-1.180.236
10-1.18-0.653-1.181.053
11-0.174-0.174-1.180.699
12-0.467-0.31-0.310.645
13-0.653-0.883-1.6071.053
14-0.82-2.115-2.1151.199
151.034-1.916-0.761-0.556
161.142-1.916-1.916-0.556
17-1.18-1.607-0.0550.934