Model info
| Transcription factor | HMX2 (GeneCards) | ||||||||
| Model | HMX2_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nWTAAKTGnbh | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 1221 | ||||||||
| TF family | NK-related factors {3.1.2} | ||||||||
| TF subfamily | NK-5/HMX {3.1.2.18} | ||||||||
| HGNC | HGNC:5018 | ||||||||
| EntrezGene | GeneID:3167 (SSTAR profile) | ||||||||
| UniProt ID | HMX2_HUMAN | ||||||||
| UniProt AC | A2RU54 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | HMX2 expression | ||||||||
| ReMap ChIP-seq dataset list | HMX2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 314.5 | 196.5 | 281.5 | 428.5 |
| 02 | 130.75 | 87.75 | 51.75 | 950.75 |
| 03 | 98.5 | 31.5 | 22.5 | 1068.5 |
| 04 | 1044.0 | 2.0 | 98.0 | 77.0 |
| 05 | 1215.0 | 0.0 | 5.0 | 1.0 |
| 06 | 132.0 | 26.0 | 378.0 | 685.0 |
| 07 | 6.0 | 211.0 | 8.0 | 996.0 |
| 08 | 38.5 | 15.5 | 1138.5 | 28.5 |
| 09 | 216.5 | 260.5 | 431.5 | 312.5 |
| 10 | 160.25 | 224.25 | 167.25 | 669.25 |
| 11 | 244.25 | 225.25 | 189.25 | 562.25 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.03 | -0.437 | -0.081 | 0.337 |
| 02 | -0.84 | -1.232 | -1.747 | 1.132 |
| 03 | -1.119 | -2.222 | -2.537 | 1.249 |
| 04 | 1.226 | -4.398 | -1.124 | -1.36 |
| 05 | 1.377 | -5.152 | -3.813 | -4.706 |
| 06 | -0.831 | -2.403 | 0.213 | 0.805 |
| 07 | -3.676 | -0.367 | -3.447 | 1.179 |
| 08 | -2.031 | -2.878 | 1.312 | -2.317 |
| 09 | -0.341 | -0.158 | 0.344 | 0.023 |
| 10 | -0.639 | -0.306 | -0.597 | 0.782 |
| 11 | -0.221 | -0.302 | -0.475 | 0.608 |