We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHNF1A
(GeneCards)
ModelHNF1A_HUMAN.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
C
Motif rank
0
ConsensusndRKWAATGWTTWMYhn
Best auROC (human)0.928
Best auROC (mouse)
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)
Aligned words501
TF familyPOU domain factors {3.1.10}
TF subfamilyHNF1-like factors {3.1.10.7}
HGNCHGNC:11621
EntrezGeneGeneID:6927
(SSTAR profile)
UniProt IDHNF1A_HUMAN
UniProt ACP20823
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.289760000000001
0.0005 12.12636
0.0001 15.96991
GTEx tissue expression atlas HNF1A expression
ReMap ChIP-seq dataset list HNF1A datasets
Motifs in JASPAR
MA0046.1 (HNF1A; Vertebrata)
MA0046.2 (HNF1A; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0150.08.063.018.020.07.06.051.041.04.038.011.051.06.092.034.0
0223.05.0129.05.013.01.07.04.026.011.0126.036.010.03.091.010.0
034.06.017.045.01.02.00.017.018.022.026.0287.00.05.013.037.0
044.04.04.011.06.03.01.025.010.013.06.027.044.026.032.0284.0
0561.00.03.00.046.00.00.00.033.01.04.05.0317.01.010.019.0
06363.060.03.031.02.00.00.00.013.01.01.02.013.010.01.00.0
0770.04.010.0307.025.01.01.044.00.00.01.04.010.00.02.021.0
080.00.044.061.00.00.02.03.00.00.08.06.00.00.0230.0146.0
090.00.00.00.00.00.00.00.0195.01.017.071.0171.01.09.035.0
1028.03.019.0316.01.00.00.01.00.04.02.020.08.01.07.090.0
113.02.00.032.01.01.00.06.00.00.01.027.010.029.03.0385.0
128.03.01.02.018.03.02.09.00.01.03.00.0336.012.028.074.0
13287.034.025.016.016.01.00.02.023.03.03.05.060.011.012.02.0
1426.0300.013.047.017.024.00.08.06.026.00.08.06.010.05.04.0
1516.027.03.09.079.0105.09.0167.05.07.00.06.015.025.06.021.0
1640.09.036.030.070.035.06.053.08.02.04.04.050.032.040.081.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.465-1.3280.695-0.543-0.439-1.454-1.60.4850.269-1.9750.193-1.0220.485-1.61.0720.083
02-0.302-1.771.408-1.77-0.86-3.126-1.454-1.975-0.181-1.0221.3850.14-1.114-2.2341.061-1.114
03-1.975-1.6-0.5990.361-3.126-2.584-4.4-0.599-0.543-0.346-0.1812.206-4.4-1.77-0.860.167
04-1.975-1.975-1.975-1.022-1.6-2.234-3.126-0.22-1.114-0.86-1.6-0.1440.339-0.1810.0232.196
050.663-4.4-2.234-4.40.383-4.4-4.4-4.40.054-3.126-1.975-1.772.306-3.126-1.114-0.49
062.4410.646-2.234-0.008-2.584-4.4-4.4-4.4-0.86-3.126-3.126-2.584-0.86-1.114-3.126-4.4
070.8-1.975-1.1142.274-0.22-3.126-3.1260.339-4.4-4.4-3.126-1.975-1.114-4.4-2.584-0.392
08-4.4-4.40.3390.663-4.4-4.4-2.584-2.234-4.4-4.4-1.328-1.6-4.4-4.41.9851.532
09-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.41.821-3.126-0.5990.8141.69-3.126-1.2150.112
10-0.108-2.234-0.492.303-3.126-4.4-4.4-3.126-4.4-1.975-2.584-0.439-1.328-3.126-1.4541.05
11-2.234-2.584-4.40.023-3.126-3.126-4.4-1.6-4.4-4.4-3.126-0.144-1.114-0.074-2.2342.5
12-1.328-2.234-3.126-2.584-0.543-2.234-2.584-1.215-4.4-3.126-2.234-4.42.364-0.938-0.1080.855
132.2060.083-0.22-0.658-0.658-3.126-4.4-2.584-0.302-2.234-2.234-1.770.646-1.022-0.938-2.584
14-0.1812.251-0.860.404-0.599-0.26-4.4-1.328-1.6-0.181-4.4-1.328-1.6-1.114-1.77-1.975
15-0.658-0.144-2.234-1.2150.921.203-1.2151.666-1.77-1.454-4.4-1.6-0.721-0.22-1.6-0.392
160.244-1.2150.14-0.040.80.112-1.60.523-1.328-2.584-1.975-1.9750.4650.0230.2440.945