We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHNF1A
(GeneCards)
ModelHNF1A_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
C
Motif rank
0
ConsensusdRKWAATGWTTWRYh
Best auROC (human)0.927
Best auROC (mouse)
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)
Aligned words500
TF familyPOU domain factors {3.1.10}
TF subfamilyHNF1-like factors {3.1.10.7}
HGNCHGNC:11621
EntrezGeneGeneID:6927
(SSTAR profile)
UniProt IDHNF1A_HUMAN
UniProt ACP20823
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.28481
0.0005 6.18446
0.0001 8.057110000000002
GTEx tissue expression atlas HNF1A expression
ReMap ChIP-seq dataset list HNF1A datasets
Motifs in JASPAR
PCM
ACGT
01160.023.0200.0117.0
0273.017.0360.050.0
0323.033.057.0387.0
0464.051.045.0340.0
05457.02.024.017.0
06396.069.09.026.0
07105.05.014.0376.0
080.00.0293.0207.0
09363.05.024.0108.0
1040.012.032.0416.0
1112.033.06.0449.0
12362.020.036.082.0
13387.040.041.032.0
1454.0361.018.067.0
15108.0170.016.0206.0
PWM
ACGT
010.244-1.640.465-0.065
02-0.529-1.921.05-0.898
03-1.64-1.298-0.7711.122
04-0.658-0.879-1.00.993
051.287-3.573-1.6-1.92
061.145-0.584-2.484-1.525
07-0.172-2.961-2.0961.093
08-4.4-4.40.8450.5
091.058-2.961-1.6-0.144
10-1.114-2.234-1.3281.194
11-2.234-1.298-2.8191.27
121.055-1.77-1.215-0.415
131.122-1.114-1.09-1.328
14-0.8231.053-1.868-0.613
15-0.1440.304-1.9750.495