Model info
| Transcription factor | HNF1A (GeneCards) | ||||||||
| Model | HNF1A_HUMAN.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 15 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dRKWAATGWTTWRYh | ||||||||
| Best auROC (human) | 0.927 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 3 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 500 | ||||||||
| TF family | POU domain factors {3.1.10} | ||||||||
| TF subfamily | HNF1-like factors {3.1.10.7} | ||||||||
| HGNC | HGNC:11621 | ||||||||
| EntrezGene | GeneID:6927 (SSTAR profile) | ||||||||
| UniProt ID | HNF1A_HUMAN | ||||||||
| UniProt AC | P20823 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | HNF1A expression | ||||||||
| ReMap ChIP-seq dataset list | HNF1A datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 160.0 | 23.0 | 200.0 | 117.0 |
| 02 | 73.0 | 17.0 | 360.0 | 50.0 |
| 03 | 23.0 | 33.0 | 57.0 | 387.0 |
| 04 | 64.0 | 51.0 | 45.0 | 340.0 |
| 05 | 457.0 | 2.0 | 24.0 | 17.0 |
| 06 | 396.0 | 69.0 | 9.0 | 26.0 |
| 07 | 105.0 | 5.0 | 14.0 | 376.0 |
| 08 | 0.0 | 0.0 | 293.0 | 207.0 |
| 09 | 363.0 | 5.0 | 24.0 | 108.0 |
| 10 | 40.0 | 12.0 | 32.0 | 416.0 |
| 11 | 12.0 | 33.0 | 6.0 | 449.0 |
| 12 | 362.0 | 20.0 | 36.0 | 82.0 |
| 13 | 387.0 | 40.0 | 41.0 | 32.0 |
| 14 | 54.0 | 361.0 | 18.0 | 67.0 |
| 15 | 108.0 | 170.0 | 16.0 | 206.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.244 | -1.64 | 0.465 | -0.065 |
| 02 | -0.529 | -1.92 | 1.05 | -0.898 |
| 03 | -1.64 | -1.298 | -0.771 | 1.122 |
| 04 | -0.658 | -0.879 | -1.0 | 0.993 |
| 05 | 1.287 | -3.573 | -1.6 | -1.92 |
| 06 | 1.145 | -0.584 | -2.484 | -1.525 |
| 07 | -0.172 | -2.961 | -2.096 | 1.093 |
| 08 | -4.4 | -4.4 | 0.845 | 0.5 |
| 09 | 1.058 | -2.961 | -1.6 | -0.144 |
| 10 | -1.114 | -2.234 | -1.328 | 1.194 |
| 11 | -2.234 | -1.298 | -2.819 | 1.27 |
| 12 | 1.055 | -1.77 | -1.215 | -0.415 |
| 13 | 1.122 | -1.114 | -1.09 | -1.328 |
| 14 | -0.823 | 1.053 | -1.868 | -0.613 |
| 15 | -0.144 | 0.304 | -1.975 | 0.495 |