Transcription factor | HNF1B (GeneCards) | ||||||||
Model | HNF1B_HUMAN.H11MO.0.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 15 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | dRTWAATGATTRMYh | ||||||||
Best auROC (human) | 0.95 | ||||||||
Best auROC (mouse) | 0.994 | ||||||||
Peak sets in benchmark (human) | 5 | ||||||||
Peak sets in benchmark (mouse) | 8 | ||||||||
Aligned words | 500 | ||||||||
TF family | POU domain factors {3.1.10} | ||||||||
TF subfamily | HNF1-like factors {3.1.10.7} | ||||||||
HGNC | HGNC:11630 | ||||||||
EntrezGene | GeneID:6928 (SSTAR profile) | ||||||||
UniProt ID | HNF1B_HUMAN | ||||||||
UniProt AC | P35680 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | HNF1B expression | ||||||||
ReMap ChIP-seq dataset list | HNF1B datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 163.0 | 34.0 | 179.0 | 124.0 |
02 | 74.0 | 17.0 | 378.0 | 31.0 |
03 | 14.0 | 40.0 | 40.0 | 406.0 |
04 | 73.0 | 41.0 | 23.0 | 363.0 |
05 | 490.0 | 1.0 | 8.0 | 1.0 |
06 | 469.0 | 23.0 | 3.0 | 5.0 |
07 | 28.0 | 5.0 | 3.0 | 464.0 |
08 | 205.0 | 0.0 | 295.0 | 0.0 |
09 | 381.0 | 2.0 | 27.0 | 90.0 |
10 | 23.0 | 12.0 | 61.0 | 404.0 |
11 | 8.0 | 19.0 | 1.0 | 472.0 |
12 | 346.0 | 32.0 | 67.0 | 55.0 |
13 | 399.0 | 47.0 | 33.0 | 21.0 |
14 | 39.0 | 366.0 | 21.0 | 74.0 |
15 | 121.0 | 179.0 | 32.0 | 168.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.263 | -1.27 | 0.355 | -0.008 |
02 | -0.516 | -1.92 | 1.098 | -1.358 |
03 | -2.096 | -1.114 | -1.114 | 1.17 |
04 | -0.529 | -1.09 | -1.64 | 1.058 |
05 | 1.357 | -3.903 | -2.584 | -3.903 |
06 | 1.313 | -1.64 | -3.325 | -2.961 |
07 | -1.454 | -2.961 | -3.325 | 1.303 |
08 | 0.49 | -4.4 | 0.852 | -4.4 |
09 | 1.106 | -3.573 | -1.489 | -0.324 |
10 | -1.64 | -2.234 | -0.705 | 1.165 |
11 | -2.584 | -1.818 | -3.903 | 1.32 |
12 | 1.01 | -1.328 | -0.613 | -0.805 |
13 | 1.152 | -0.958 | -1.298 | -1.725 |
14 | -1.138 | 1.066 | -1.725 | -0.516 |
15 | -0.032 | 0.355 | -1.328 | 0.293 |