Model info
| Transcription factor | HNF1B (GeneCards) | ||||||||
| Model | HNF1B_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 15 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dRTWAATGATTRMYh | ||||||||
| Best auROC (human) | 0.95 | ||||||||
| Best auROC (mouse) | 0.994 | ||||||||
| Peak sets in benchmark (human) | 5 | ||||||||
| Peak sets in benchmark (mouse) | 8 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | POU domain factors {3.1.10} | ||||||||
| TF subfamily | HNF1-like factors {3.1.10.7} | ||||||||
| HGNC | HGNC:11630 | ||||||||
| EntrezGene | GeneID:6928 (SSTAR profile) | ||||||||
| UniProt ID | HNF1B_HUMAN | ||||||||
| UniProt AC | P35680 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | HNF1B expression | ||||||||
| ReMap ChIP-seq dataset list | HNF1B datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 163.0 | 34.0 | 179.0 | 124.0 |
| 02 | 74.0 | 17.0 | 378.0 | 31.0 |
| 03 | 14.0 | 40.0 | 40.0 | 406.0 |
| 04 | 73.0 | 41.0 | 23.0 | 363.0 |
| 05 | 490.0 | 1.0 | 8.0 | 1.0 |
| 06 | 469.0 | 23.0 | 3.0 | 5.0 |
| 07 | 28.0 | 5.0 | 3.0 | 464.0 |
| 08 | 205.0 | 0.0 | 295.0 | 0.0 |
| 09 | 381.0 | 2.0 | 27.0 | 90.0 |
| 10 | 23.0 | 12.0 | 61.0 | 404.0 |
| 11 | 8.0 | 19.0 | 1.0 | 472.0 |
| 12 | 346.0 | 32.0 | 67.0 | 55.0 |
| 13 | 399.0 | 47.0 | 33.0 | 21.0 |
| 14 | 39.0 | 366.0 | 21.0 | 74.0 |
| 15 | 121.0 | 179.0 | 32.0 | 168.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.263 | -1.27 | 0.355 | -0.008 |
| 02 | -0.516 | -1.92 | 1.098 | -1.358 |
| 03 | -2.096 | -1.114 | -1.114 | 1.17 |
| 04 | -0.529 | -1.09 | -1.64 | 1.058 |
| 05 | 1.357 | -3.903 | -2.584 | -3.903 |
| 06 | 1.313 | -1.64 | -3.325 | -2.961 |
| 07 | -1.454 | -2.961 | -3.325 | 1.303 |
| 08 | 0.49 | -4.4 | 0.852 | -4.4 |
| 09 | 1.106 | -3.573 | -1.489 | -0.324 |
| 10 | -1.64 | -2.234 | -0.705 | 1.165 |
| 11 | -2.584 | -1.818 | -3.903 | 1.32 |
| 12 | 1.01 | -1.328 | -0.613 | -0.805 |
| 13 | 1.152 | -0.958 | -1.298 | -1.725 |
| 14 | -1.138 | 1.066 | -1.725 | -0.516 |
| 15 | -0.032 | 0.355 | -1.328 | 0.293 |