We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHNF1B
(GeneCards)
ModelHNF1B_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
0
ConsensusdRTWAATGATTRMYh
Best auROC (human)0.95
Best auROC (mouse)0.994
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)8
Aligned words500
TF familyPOU domain factors {3.1.10}
TF subfamilyHNF1-like factors {3.1.10.7}
HGNCHGNC:11630
EntrezGeneGeneID:6928
(SSTAR profile)
UniProt IDHNF1B_HUMAN
UniProt ACP35680
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.5054099999999995
0.0005 5.55861
0.0001 7.7416100000000005
GTEx tissue expression atlas HNF1B expression
ReMap ChIP-seq dataset list HNF1B datasets
Motifs in JASPAR
MA0153.1 (HNF1B; Mus musculus/Homo sapiens)
MA0153.2 (HNF1B; Homo sapiens)
PCM
ACGT
01163.034.0179.0124.0
0274.017.0378.031.0
0314.040.040.0406.0
0473.041.023.0363.0
05490.01.08.01.0
06469.023.03.05.0
0728.05.03.0464.0
08205.00.0295.00.0
09381.02.027.090.0
1023.012.061.0404.0
118.019.01.0472.0
12346.032.067.055.0
13399.047.033.021.0
1439.0366.021.074.0
15121.0179.032.0168.0
PWM
ACGT
010.263-1.270.355-0.008
02-0.516-1.921.098-1.358
03-2.096-1.114-1.1141.17
04-0.529-1.09-1.641.058
051.357-3.903-2.584-3.903
061.313-1.64-3.325-2.961
07-1.454-2.961-3.3251.303
080.49-4.40.852-4.4
091.106-3.573-1.489-0.324
10-1.64-2.234-0.7051.165
11-2.584-1.818-3.9031.32
121.01-1.328-0.613-0.805
131.152-0.958-1.298-1.725
14-1.1381.066-1.725-0.516
15-0.0320.355-1.3280.293