Model info
| Transcription factor | HNF1B (GeneCards) | ||||||||
| Model | HNF1B_HUMAN.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | dGTTAATnATT | ||||||||
| Best auROC (human) | 0.916 | ||||||||
| Best auROC (mouse) | 0.993 | ||||||||
| Peak sets in benchmark (human) | 5 | ||||||||
| Peak sets in benchmark (mouse) | 8 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | POU domain factors {3.1.10} | ||||||||
| TF subfamily | HNF1-like factors {3.1.10.7} | ||||||||
| HGNC | HGNC:11630 | ||||||||
| EntrezGene | GeneID:6928 (SSTAR profile) | ||||||||
| UniProt ID | HNF1B_HUMAN | ||||||||
| UniProt AC | P35680 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | HNF1B expression | ||||||||
| ReMap ChIP-seq dataset list | HNF1B datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 195.0 | 6.0 | 187.0 | 112.0 |
| 02 | 26.0 | 2.0 | 465.0 | 7.0 |
| 03 | 0.0 | 21.0 | 4.0 | 475.0 |
| 04 | 36.0 | 15.0 | 6.0 | 443.0 |
| 05 | 493.0 | 0.0 | 6.0 | 1.0 |
| 06 | 467.0 | 23.0 | 2.0 | 8.0 |
| 07 | 40.0 | 15.0 | 4.0 | 441.0 |
| 08 | 128.0 | 129.0 | 174.0 | 69.0 |
| 09 | 407.0 | 1.0 | 17.0 | 75.0 |
| 10 | 19.0 | 12.0 | 57.0 | 412.0 |
| 11 | 8.0 | 24.0 | 2.0 | 466.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.44 | -2.819 | 0.399 | -0.108 |
| 02 | -1.525 | -3.573 | 1.305 | -2.694 |
| 03 | -4.4 | -1.725 | -3.126 | 1.326 |
| 04 | -1.215 | -2.034 | -2.819 | 1.256 |
| 05 | 1.363 | -4.4 | -2.819 | -3.903 |
| 06 | 1.309 | -1.64 | -3.573 | -2.584 |
| 07 | -1.114 | -2.034 | -3.126 | 1.252 |
| 08 | 0.023 | 0.031 | 0.327 | -0.584 |
| 09 | 1.172 | -3.903 | -1.92 | -0.503 |
| 10 | -1.818 | -2.234 | -0.771 | 1.184 |
| 11 | -2.584 | -1.6 | -3.573 | 1.307 |