We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHNF1B
(GeneCards)
ModelHNF1B_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
1
ConsensusdGTTAATnATT
Best auROC (human)0.916
Best auROC (mouse)0.993
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)8
Aligned words500
TF familyPOU domain factors {3.1.10}
TF subfamilyHNF1-like factors {3.1.10.7}
HGNCHGNC:11630
EntrezGeneGeneID:6928
(SSTAR profile)
UniProt IDHNF1B_HUMAN
UniProt ACP35680
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.822785
0.0005 5.87346
0.0001 8.042885
GTEx tissue expression atlas HNF1B expression
ReMap ChIP-seq dataset list HNF1B datasets
Motifs in JASPAR
PCM
ACGT
01195.06.0187.0112.0
0226.02.0465.07.0
030.021.04.0475.0
0436.015.06.0443.0
05493.00.06.01.0
06467.023.02.08.0
0740.015.04.0441.0
08128.0129.0174.069.0
09407.01.017.075.0
1019.012.057.0412.0
118.024.02.0466.0
PWM
ACGT
010.44-2.8190.399-0.108
02-1.525-3.5731.305-2.694
03-4.4-1.725-3.1261.326
04-1.215-2.034-2.8191.256
051.363-4.4-2.819-3.903
061.309-1.64-3.573-2.584
07-1.114-2.034-3.1261.252
080.0230.0310.327-0.584
091.172-3.903-1.92-0.503
10-1.818-2.234-0.7711.184
11-2.584-1.6-3.5731.307