Model info
| Transcription factor | Hnf1b | ||||||||
| Model | HNF1B_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 15 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dRTWAATGWKTWMYh | ||||||||
| Best auROC (human) | 0.947 | ||||||||
| Best auROC (mouse) | 0.995 | ||||||||
| Peak sets in benchmark (human) | 5 | ||||||||
| Peak sets in benchmark (mouse) | 8 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | POU domain factors {3.1.10} | ||||||||
| TF subfamily | HNF1-like factors {3.1.10.7} | ||||||||
| MGI | MGI:98505 | ||||||||
| EntrezGene | GeneID:21410 (SSTAR profile) | ||||||||
| UniProt ID | HNF1B_MOUSE | ||||||||
| UniProt AC | P27889 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Hnf1b expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 201.0 | 28.0 | 172.0 | 99.0 |
| 02 | 82.0 | 15.0 | 367.0 | 36.0 |
| 03 | 21.0 | 28.0 | 25.0 | 426.0 |
| 04 | 49.0 | 41.0 | 36.0 | 374.0 |
| 05 | 469.0 | 3.0 | 20.0 | 8.0 |
| 06 | 447.0 | 29.0 | 3.0 | 21.0 |
| 07 | 38.0 | 11.0 | 2.0 | 449.0 |
| 08 | 197.0 | 0.0 | 303.0 | 0.0 |
| 09 | 372.0 | 13.0 | 17.0 | 98.0 |
| 10 | 41.0 | 12.0 | 55.0 | 392.0 |
| 11 | 6.0 | 17.0 | 4.0 | 473.0 |
| 12 | 355.0 | 34.0 | 46.0 | 65.0 |
| 13 | 390.0 | 47.0 | 39.0 | 24.0 |
| 14 | 41.0 | 350.0 | 19.0 | 90.0 |
| 15 | 123.0 | 142.0 | 37.0 | 198.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.47 | -1.454 | 0.316 | -0.23 |
| 02 | -0.415 | -2.034 | 1.069 | -1.215 |
| 03 | -1.725 | -1.454 | -1.561 | 1.217 |
| 04 | -0.918 | -1.09 | -1.215 | 1.088 |
| 05 | 1.313 | -3.325 | -1.77 | -2.584 |
| 06 | 1.265 | -1.421 | -3.325 | -1.725 |
| 07 | -1.163 | -2.311 | -3.573 | 1.27 |
| 08 | 0.45 | -4.4 | 0.878 | -4.4 |
| 09 | 1.082 | -2.163 | -1.92 | -0.24 |
| 10 | -1.09 | -2.234 | -0.805 | 1.135 |
| 11 | -2.819 | -1.92 | -3.126 | 1.322 |
| 12 | 1.036 | -1.27 | -0.979 | -0.643 |
| 13 | 1.129 | -0.958 | -1.138 | -1.6 |
| 14 | -1.09 | 1.022 | -1.818 | -0.324 |
| 15 | -0.016 | 0.126 | -1.189 | 0.455 |