We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHnf1b
ModelHNF1B_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
0
ConsensusdRTWAATGWKTWMYh
Best auROC (human)0.947
Best auROC (mouse)0.995
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)8
Aligned words500
TF familyPOU domain factors {3.1.10}
TF subfamilyHNF1-like factors {3.1.10.7}
MGIMGI:98505
EntrezGeneGeneID:21410
(SSTAR profile)
UniProt IDHNF1B_MOUSE
UniProt ACP27889
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.64611
0.0005 5.63221
0.0001 7.7027600000000005
GTEx tissue expression atlas Hnf1b expression
Motifs in JASPAR
PCM
ACGT
01201.028.0172.099.0
0282.015.0367.036.0
0321.028.025.0426.0
0449.041.036.0374.0
05469.03.020.08.0
06447.029.03.021.0
0738.011.02.0449.0
08197.00.0303.00.0
09372.013.017.098.0
1041.012.055.0392.0
116.017.04.0473.0
12355.034.046.065.0
13390.047.039.024.0
1441.0350.019.090.0
15123.0142.037.0198.0
PWM
ACGT
010.47-1.4540.316-0.23
02-0.415-2.0341.069-1.215
03-1.725-1.454-1.5611.217
04-0.918-1.09-1.2151.088
051.313-3.325-1.77-2.584
061.265-1.421-3.325-1.725
07-1.163-2.311-3.5731.27
080.45-4.40.878-4.4
091.082-2.163-1.92-0.24
10-1.09-2.234-0.8051.135
11-2.819-1.92-3.1261.322
121.036-1.27-0.979-0.643
131.129-0.958-1.138-1.6
14-1.091.022-1.818-0.324
15-0.0160.126-1.1890.455