We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHNF4A
(GeneCards)
ModelHNF4A_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
0
ConsensusnvRGdnCAAAGTYCWn
Best auROC (human)0.988
Best auROC (mouse)0.987
Peak sets in benchmark (human)49
Peak sets in benchmark (mouse)33
Aligned words504
TF familyRXR-related receptors (NR2) {2.1.3}
TF subfamilyHNF-4 (NR2A) {2.1.3.2}
HGNCHGNC:5024
EntrezGeneGeneID:3172
(SSTAR profile)
UniProt IDHNF4A_HUMAN
UniProt ACP41235
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 7.978010000000001
0.0005 10.21301
0.0001 14.880560000000001
GTEx tissue expression atlas HNF4A expression
ReMap ChIP-seq dataset list HNF4A datasets
Motifs in JASPAR
MA0114.1 (HNF4A; )
MA0114.2 (HNF4A; Homo sapiens)
MA0114.3 (Hnf4a; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0164.032.079.013.031.022.017.028.040.015.037.05.019.016.070.09.0
0282.03.053.016.054.01.012.018.094.03.099.07.016.03.028.08.0
0319.05.0208.014.02.00.06.02.09.06.0157.020.00.00.046.03.0
045.00.010.015.01.01.00.09.063.025.0172.0157.04.01.08.026.0
059.09.024.031.05.010.02.010.039.031.068.052.024.0111.025.047.0
060.071.00.06.03.0145.00.013.02.0103.03.011.01.0133.02.04.0
073.01.02.00.0441.04.07.00.04.01.00.00.031.00.03.00.0
08434.01.039.05.04.00.02.00.08.00.04.00.00.00.00.00.0
09428.02.015.01.01.00.00.00.044.00.00.01.03.00.00.02.0
103.02.0462.09.00.00.01.01.00.00.015.00.00.00.04.00.0
110.01.02.00.00.00.00.02.05.02.0102.0373.01.00.01.08.0
120.01.01.04.00.02.00.01.04.09.020.072.020.0298.016.049.0
130.022.02.00.03.0278.01.028.03.031.02.01.02.0109.04.011.0
143.01.02.02.0345.017.025.053.01.03.05.00.019.07.013.01.0
15102.086.0116.064.05.06.03.014.010.011.017.07.04.024.010.018.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.7170.0290.926-0.854-0.002-0.34-0.593-0.1020.25-0.7150.173-1.764-0.484-0.6520.806-1.209
020.963-2.2280.529-0.6520.548-3.121-0.932-0.5371.099-2.2281.151-1.449-0.652-2.228-0.102-1.322
03-0.484-1.7641.891-0.782-2.578-4.395-1.594-2.578-1.209-1.5941.61-0.433-4.395-4.3950.389-2.228
04-1.764-4.395-1.108-0.715-3.121-3.121-4.395-1.2090.701-0.2141.7011.61-1.97-3.121-1.322-0.176
05-1.209-1.209-0.254-0.002-1.764-1.108-2.578-1.1080.225-0.0020.7770.51-0.2541.265-0.2140.41
06-4.3950.82-4.395-1.594-2.2281.531-4.395-0.854-2.5781.19-2.228-1.016-3.1211.445-2.578-1.97
07-2.228-3.121-2.578-4.3952.642-1.97-1.449-4.395-1.97-3.121-4.395-4.395-0.002-4.395-2.228-4.395
082.626-3.1210.225-1.764-1.97-4.395-2.578-4.395-1.322-4.395-1.97-4.395-4.395-4.395-4.395-4.395
092.612-2.578-0.715-3.121-3.121-4.395-4.395-4.3950.345-4.395-4.395-3.121-2.228-4.395-4.395-2.578
10-2.228-2.5782.688-1.209-4.395-4.395-3.121-3.121-4.395-4.395-0.715-4.395-4.395-4.395-1.97-4.395
11-4.395-3.121-2.578-4.395-4.395-4.395-4.395-2.578-1.764-2.5781.182.474-3.121-4.395-3.121-1.322
12-4.395-3.121-3.121-1.97-4.395-2.578-4.395-3.121-1.97-1.209-0.4330.834-0.4332.25-0.6520.451
13-4.395-0.34-2.578-4.395-2.2282.181-3.121-0.102-2.228-0.002-2.578-3.121-2.5781.246-1.97-1.016
14-2.228-3.121-2.578-2.5782.396-0.593-0.2140.529-3.121-2.228-1.764-4.395-0.484-1.449-0.854-3.121
151.181.011.3090.717-1.764-1.594-2.228-0.782-1.108-1.016-0.593-1.449-1.97-0.254-1.108-0.537