Model info
| Transcription factor | HNF4A (GeneCards) | ||||||||
| Model | HNF4A_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 14 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vRGdnCAAAGTYCR | ||||||||
| Best auROC (human) | 0.985 | ||||||||
| Best auROC (mouse) | 0.981 | ||||||||
| Peak sets in benchmark (human) | 49 | ||||||||
| Peak sets in benchmark (mouse) | 33 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | RXR-related receptors (NR2) {2.1.3} | ||||||||
| TF subfamily | HNF-4 (NR2A) {2.1.3.2} | ||||||||
| HGNC | HGNC:5024 | ||||||||
| EntrezGene | GeneID:3172 (SSTAR profile) | ||||||||
| UniProt ID | HNF4A_HUMAN | ||||||||
| UniProt AC | P41235 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | HNF4A expression | ||||||||
| ReMap ChIP-seq dataset list | HNF4A datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 145.0 | 88.0 | 209.0 | 58.0 |
| 02 | 230.0 | 17.0 | 213.0 | 40.0 |
| 03 | 37.0 | 9.0 | 428.0 | 26.0 |
| 04 | 73.0 | 22.0 | 201.0 | 204.0 |
| 05 | 67.0 | 163.0 | 130.0 | 140.0 |
| 06 | 4.0 | 452.0 | 4.0 | 40.0 |
| 07 | 474.0 | 7.0 | 16.0 | 3.0 |
| 08 | 452.0 | 9.0 | 35.0 | 4.0 |
| 09 | 466.0 | 0.0 | 28.0 | 6.0 |
| 10 | 3.0 | 2.0 | 484.0 | 11.0 |
| 11 | 14.0 | 5.0 | 96.0 | 385.0 |
| 12 | 21.0 | 320.0 | 29.0 | 130.0 |
| 13 | 9.0 | 447.0 | 5.0 | 39.0 |
| 14 | 382.0 | 35.0 | 42.0 | 41.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.147 | -0.346 | 0.509 | -0.754 |
| 02 | 0.604 | -1.92 | 0.528 | -1.114 |
| 03 | -1.189 | -2.484 | 1.222 | -1.525 |
| 04 | -0.529 | -1.681 | 0.47 | 0.485 |
| 05 | -0.613 | 0.263 | 0.039 | 0.112 |
| 06 | -3.126 | 1.276 | -3.126 | -1.114 |
| 07 | 1.324 | -2.694 | -1.975 | -3.325 |
| 08 | 1.276 | -2.484 | -1.242 | -3.126 |
| 09 | 1.307 | -4.4 | -1.454 | -2.819 |
| 10 | -3.325 | -3.573 | 1.345 | -2.311 |
| 11 | -2.096 | -2.961 | -0.26 | 1.117 |
| 12 | -1.725 | 0.932 | -1.421 | 0.039 |
| 13 | -2.484 | 1.265 | -2.961 | -1.138 |
| 14 | 1.109 | -1.242 | -1.067 | -1.09 |