We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHNF4A
(GeneCards)
ModelHNF4A_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusvRGdnCAAAGTYCR
Best auROC (human)0.985
Best auROC (mouse)0.981
Peak sets in benchmark (human)49
Peak sets in benchmark (mouse)33
Aligned words500
TF familyRXR-related receptors (NR2) {2.1.3}
TF subfamilyHNF-4 (NR2A) {2.1.3.2}
HGNCHGNC:5024
EntrezGeneGeneID:3172
(SSTAR profile)
UniProt IDHNF4A_HUMAN
UniProt ACP41235
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.28126
0.0005 5.36111
0.0001 7.616115000000001
GTEx tissue expression atlas HNF4A expression
ReMap ChIP-seq dataset list HNF4A datasets
Motifs in JASPAR
MA0114.1 (HNF4A; )
MA0114.2 (HNF4A; Homo sapiens)
MA0114.3 (Hnf4a; Mus musculus)
PCM
ACGT
01145.088.0209.058.0
02230.017.0213.040.0
0337.09.0428.026.0
0473.022.0201.0204.0
0567.0163.0130.0140.0
064.0452.04.040.0
07474.07.016.03.0
08452.09.035.04.0
09466.00.028.06.0
103.02.0484.011.0
1114.05.096.0385.0
1221.0320.029.0130.0
139.0447.05.039.0
14382.035.042.041.0
PWM
ACGT
010.147-0.3460.509-0.754
020.604-1.920.528-1.114
03-1.189-2.4841.222-1.525
04-0.529-1.6810.470.485
05-0.6130.2630.0390.112
06-3.1261.276-3.126-1.114
071.324-2.694-1.975-3.325
081.276-2.484-1.242-3.126
091.307-4.4-1.454-2.819
10-3.325-3.5731.345-2.311
11-2.096-2.961-0.261.117
12-1.7250.932-1.4210.039
13-2.4841.265-2.961-1.138
141.109-1.242-1.067-1.09