We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHnf4a
ModelHNF4A_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
A
Motif rank
0
ConsensushhvRRdbCARAGKbCWn
Best auROC (human)0.987
Best auROC (mouse)0.988
Peak sets in benchmark (human)49
Peak sets in benchmark (mouse)33
Aligned words386
TF familyRXR-related receptors (NR2) {2.1.3}
TF subfamilyHNF-4 (NR2A) {2.1.3.2}
MGIMGI:109128
EntrezGeneGeneID:15378
(SSTAR profile)
UniProt IDHNF4A_MOUSE
UniProt ACP49698
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.09951
0.0005 11.81591
0.0001 15.43046
GTEx tissue expression atlas Hnf4a expression
Motifs in JASPAR
MA0114.1 (HNF4A; )
MA0114.2 (HNF4A; Homo sapiens)
MA0114.3 (Hnf4a; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0127.025.020.08.089.035.07.029.020.014.016.011.019.023.023.020.0
0267.026.048.014.051.022.09.015.026.014.022.04.013.010.039.06.0
0381.07.061.08.052.02.04.014.054.09.044.011.014.02.020.03.0
0419.04.0171.07.06.01.04.09.013.013.087.016.01.01.029.05.0
0513.04.015.07.04.00.01.014.041.014.091.0145.03.01.014.019.0
064.017.028.012.03.03.01.012.019.024.045.033.014.0116.021.034.0
072.036.00.02.07.0141.00.012.00.081.06.08.02.079.04.06.0
087.01.03.00.0320.08.05.04.09.01.00.00.021.00.07.00.0
09256.010.077.014.06.00.04.00.011.00.04.00.04.00.00.00.0
10220.07.042.08.010.00.00.00.065.04.010.06.012.00.02.00.0
1116.06.0277.08.04.00.03.04.00.02.050.02.00.00.013.01.0
124.01.013.02.06.01.00.01.023.011.056.0253.01.04.02.08.0
134.011.010.09.05.05.01.06.03.014.018.036.023.0191.014.036.0
143.029.03.00.06.0191.03.021.05.032.04.02.06.069.04.08.0
155.05.08.02.0249.023.013.036.011.03.00.00.011.04.012.04.0
1662.079.093.042.015.08.04.08.09.016.02.06.08.09.011.014.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.1110.035-0.184-1.0741.2940.367-1.2010.181-0.184-0.533-0.403-0.767-0.235-0.047-0.047-0.184
021.0120.0740.68-0.5330.741-0.091-0.961-0.4660.074-0.533-0.091-1.723-0.605-0.8590.475-1.347
031.2-1.2010.918-1.0740.76-2.335-1.723-0.5330.797-0.9610.594-0.767-0.533-2.335-0.184-1.983
04-0.235-1.7231.945-1.201-1.347-2.882-1.723-0.961-0.605-0.6051.272-0.403-2.882-2.8820.181-1.517
05-0.605-1.723-0.466-1.201-1.723-4.187-2.882-0.5330.524-0.5331.3161.781-1.983-2.882-0.533-0.235
06-1.723-0.3440.147-0.683-1.983-1.983-2.882-0.683-0.235-0.0050.6160.309-0.5331.558-0.1360.339
07-2.3350.395-4.187-2.335-1.2011.753-4.187-0.683-4.1871.2-1.347-1.074-2.3351.176-1.723-1.347
08-1.201-2.882-1.983-4.1872.571-1.074-1.517-1.723-0.961-2.882-4.187-4.187-0.136-4.187-1.201-4.187
092.348-0.8591.15-0.533-1.347-4.187-1.723-4.187-0.767-4.187-1.723-4.187-1.723-4.187-4.187-4.187
102.197-1.2010.548-1.074-0.859-4.187-4.187-4.1870.982-1.723-0.859-1.347-0.683-4.187-2.335-4.187
11-0.403-1.3472.427-1.074-1.723-4.187-1.983-1.723-4.187-2.3350.721-2.335-4.187-4.187-0.605-2.882
12-1.723-2.882-0.605-2.335-1.347-2.882-4.187-2.882-0.047-0.7670.8332.336-2.882-1.723-2.335-1.074
13-1.723-0.767-0.859-0.961-1.517-1.517-2.882-1.347-1.983-0.533-0.2880.395-0.0472.056-0.5330.395
14-1.9830.181-1.983-4.187-1.3472.056-1.983-0.136-1.5170.279-1.723-2.335-1.3471.041-1.723-1.074
15-1.517-1.517-1.074-2.3352.32-0.047-0.6050.395-0.767-1.983-4.187-4.187-0.767-1.723-0.683-1.723
160.9351.1761.3380.548-0.466-1.074-1.723-1.074-0.961-0.403-2.335-1.347-1.074-0.961-0.767-0.533