Model info
| Transcription factor | Hnf4a | ||||||||
| Model | HNF4A_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 14 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vdRdbCAAAGTYCR | ||||||||
| Best auROC (human) | 0.983 | ||||||||
| Best auROC (mouse) | 0.982 | ||||||||
| Peak sets in benchmark (human) | 49 | ||||||||
| Peak sets in benchmark (mouse) | 33 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | RXR-related receptors (NR2) {2.1.3} | ||||||||
| TF subfamily | HNF-4 (NR2A) {2.1.3.2} | ||||||||
| MGI | MGI:109128 | ||||||||
| EntrezGene | GeneID:15378 (SSTAR profile) | ||||||||
| UniProt ID | HNF4A_MOUSE | ||||||||
| UniProt AC | P49698 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Hnf4a expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 173.0 | 94.0 | 166.0 | 67.0 |
| 02 | 218.0 | 15.0 | 195.0 | 72.0 |
| 03 | 65.0 | 17.0 | 375.0 | 43.0 |
| 04 | 62.0 | 27.0 | 207.0 | 204.0 |
| 05 | 54.0 | 220.0 | 106.0 | 120.0 |
| 06 | 12.0 | 456.0 | 1.0 | 31.0 |
| 07 | 477.0 | 6.0 | 13.0 | 4.0 |
| 08 | 402.0 | 3.0 | 82.0 | 13.0 |
| 09 | 440.0 | 1.0 | 52.0 | 7.0 |
| 10 | 1.0 | 3.0 | 491.0 | 5.0 |
| 11 | 11.0 | 3.0 | 71.0 | 415.0 |
| 12 | 7.0 | 343.0 | 46.0 | 104.0 |
| 13 | 4.0 | 445.0 | 5.0 | 46.0 |
| 14 | 370.0 | 21.0 | 55.0 | 54.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.322 | -0.281 | 0.281 | -0.613 |
| 02 | 0.551 | -2.034 | 0.44 | -0.543 |
| 03 | -0.643 | -1.92 | 1.09 | -1.044 |
| 04 | -0.689 | -1.489 | 0.5 | 0.485 |
| 05 | -0.823 | 0.56 | -0.163 | -0.04 |
| 06 | -2.234 | 1.285 | -3.903 | -1.358 |
| 07 | 1.33 | -2.819 | -2.163 | -3.126 |
| 08 | 1.16 | -3.325 | -0.415 | -2.163 |
| 09 | 1.25 | -3.903 | -0.86 | -2.694 |
| 10 | -3.903 | -3.325 | 1.359 | -2.961 |
| 11 | -2.311 | -3.325 | -0.556 | 1.191 |
| 12 | -2.694 | 1.002 | -0.979 | -0.181 |
| 13 | -3.126 | 1.261 | -2.961 | -0.979 |
| 14 | 1.077 | -1.725 | -0.805 | -0.823 |