We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHNF4G
(GeneCards)
ModelHNF4G_HUMAN.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
B
Motif rank
0
ConsensusvRGdnCAAAGKYCRn
Best auROC (human)0.987
Best auROC (mouse)
Peak sets in benchmark (human)6
Peak sets in benchmark (mouse)
Aligned words507
TF familyRXR-related receptors (NR2) {2.1.3}
TF subfamilyHNF-4 (NR2A) {2.1.3.2}
HGNCHGNC:5026
EntrezGeneGeneID:3174
(SSTAR profile)
UniProt IDHNF4G_HUMAN
UniProt ACQ14541
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.89976
0.0005 11.00771
0.0001 15.371110000000002
GTEx tissue expression atlas HNF4G expression
ReMap ChIP-seq dataset list HNF4G datasets
Motifs in JASPAR
MA0484.1 (HNF4G; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0163.04.063.08.078.02.014.029.074.04.087.017.09.02.041.05.0
0213.05.0192.014.01.01.08.02.019.05.0162.019.02.00.055.02.0
036.05.010.014.01.00.00.010.078.024.0141.0174.03.02.015.017.0
0415.013.035.025.05.04.03.019.036.034.060.036.021.0104.039.051.0
050.074.00.03.02.0139.00.014.00.0122.03.012.02.0121.03.05.0
063.00.01.00.0436.05.09.06.06.00.00.00.033.00.01.00.0
07403.04.070.01.04.00.01.00.010.00.01.00.05.00.01.00.0
08392.00.024.06.04.00.00.00.068.00.05.00.01.00.00.00.0
092.03.0451.09.00.00.00.00.00.00.029.00.01.00.05.00.0
100.00.03.00.00.00.00.03.08.03.0185.0289.00.00.01.08.0
111.01.01.05.00.00.00.03.03.033.044.0109.015.0216.012.057.0
120.017.02.00.01.0210.01.038.01.050.01.05.05.0140.05.024.0
134.01.02.00.0313.027.035.042.06.00.00.03.029.05.025.08.0
1474.092.0128.058.011.08.01.013.015.015.015.017.011.010.016.016.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.695-1.9750.695-1.3280.907-2.584-0.788-0.0740.855-1.9751.016-0.599-1.215-2.5840.269-1.77
02-0.86-1.771.805-0.788-3.126-3.126-1.328-2.584-0.49-1.771.636-0.49-2.584-4.40.56-2.584
03-1.6-1.77-1.114-0.788-3.126-4.4-4.4-1.1140.907-0.261.4971.707-2.234-2.584-0.721-0.599
04-0.721-0.860.112-0.22-1.77-1.975-2.234-0.490.140.0830.6460.14-0.3921.1940.2190.485
05-4.40.855-4.4-2.234-2.5841.483-4.4-0.788-4.41.353-2.234-0.938-2.5841.345-2.234-1.77
06-2.234-4.4-3.126-4.42.624-1.77-1.215-1.6-1.6-4.4-4.4-4.40.054-4.4-3.126-4.4
072.546-1.9750.8-3.126-1.975-4.4-3.126-4.4-1.114-4.4-3.126-4.4-1.77-4.4-3.126-4.4
082.518-4.4-0.26-1.6-1.975-4.4-4.4-4.40.771-4.4-1.77-4.4-3.126-4.4-4.4-4.4
09-2.584-2.2342.658-1.215-4.4-4.4-4.4-4.4-4.4-4.4-0.074-4.4-3.126-4.4-1.77-4.4
10-4.4-4.4-2.234-4.4-4.4-4.4-4.4-2.234-1.328-2.2341.7682.213-4.4-4.4-3.126-1.328
11-3.126-3.126-3.126-1.77-4.4-4.4-4.4-2.234-2.2340.0540.3391.241-0.7211.923-0.9380.595
12-4.4-0.599-2.584-4.4-3.1261.895-3.1260.193-3.1260.465-3.126-1.77-1.771.49-1.77-0.26
13-1.975-3.126-2.584-4.42.293-0.1440.1120.293-1.6-4.4-4.4-2.234-0.074-1.77-0.22-1.328
140.8551.0721.4010.613-1.022-1.328-3.126-0.86-0.721-0.721-0.721-0.599-1.022-1.114-0.658-0.658