Model info
| Transcription factor | HNF4G (GeneCards) | ||||||||
| Model | HNF4G_HUMAN.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 14 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vRGdnCAAAGKbCR | ||||||||
| Best auROC (human) | 0.983 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 6 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 500 | ||||||||
| TF family | RXR-related receptors (NR2) {2.1.3} | ||||||||
| TF subfamily | HNF-4 (NR2A) {2.1.3.2} | ||||||||
| HGNC | HGNC:5026 | ||||||||
| EntrezGene | GeneID:3174 (SSTAR profile) | ||||||||
| UniProt ID | HNF4G_HUMAN | ||||||||
| UniProt AC | Q14541 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | HNF4G expression | ||||||||
| ReMap ChIP-seq dataset list | HNF4G datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 141.0 | 127.0 | 177.0 | 55.0 |
| 02 | 228.0 | 16.0 | 199.0 | 57.0 |
| 03 | 36.0 | 9.0 | 424.0 | 31.0 |
| 04 | 91.0 | 35.0 | 163.0 | 211.0 |
| 05 | 75.0 | 154.0 | 139.0 | 132.0 |
| 06 | 4.0 | 463.0 | 5.0 | 28.0 |
| 07 | 475.0 | 11.0 | 8.0 | 6.0 |
| 08 | 423.0 | 4.0 | 72.0 | 1.0 |
| 09 | 461.0 | 0.0 | 34.0 | 5.0 |
| 10 | 4.0 | 3.0 | 484.0 | 9.0 |
| 11 | 8.0 | 4.0 | 191.0 | 297.0 |
| 12 | 21.0 | 248.0 | 64.0 | 167.0 |
| 13 | 9.0 | 418.0 | 8.0 | 65.0 |
| 14 | 351.0 | 32.0 | 65.0 | 52.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.119 | 0.016 | 0.344 | -0.805 |
| 02 | 0.595 | -1.975 | 0.46 | -0.771 |
| 03 | -1.215 | -2.484 | 1.213 | -1.358 |
| 04 | -0.313 | -1.242 | 0.263 | 0.519 |
| 05 | -0.503 | 0.206 | 0.105 | 0.054 |
| 06 | -3.126 | 1.3 | -2.961 | -1.454 |
| 07 | 1.326 | -2.311 | -2.584 | -2.819 |
| 08 | 1.21 | -3.126 | -0.543 | -3.903 |
| 09 | 1.296 | -4.4 | -1.27 | -2.961 |
| 10 | -3.126 | -3.325 | 1.345 | -2.484 |
| 11 | -2.584 | -3.126 | 0.42 | 0.858 |
| 12 | -1.725 | 0.679 | -0.658 | 0.287 |
| 13 | -2.484 | 1.199 | -2.584 | -0.643 |
| 14 | 1.025 | -1.328 | -0.643 | -0.86 |