HNF4G_MOUSE.H11MO.0.C motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

Model

HNF4G_MOUSE.H11MO.0.C

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

ChIP-Seq

Model release

HOCOMOCOv11

Model length

14

Quality

C

Motif rank

0

Consensus

vRGdnCAAAGKbCR

Best auROC (human)

0.983

Best auROC (mouse)

Peak sets in benchmark (human)

6

Peak sets in benchmark (mouse)

Aligned words

500

TF family

RXR-related receptors (NR2) {2.1.3}

TF subfamily

HNF-4 (NR2A) {2.1.3.2}

MGI

EntrezGene

GeneID:30942
(SSTAR profile)

UniProt ID

UniProt AC

Q9WUU6
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	4.64956
0.0005	5.69401
0.0001	7.822965

GTEx tissue expression atlas

Hnf4g expression

Motifs in JASPAR

MA0484.1 (HNF4G; Homo sapiens)

PCM

	A	C	G	T
01	141.0	127.0	177.0	55.0
02	228.0	16.0	199.0	57.0
03	36.0	9.0	424.0	31.0
04	91.0	35.0	163.0	211.0
05	75.0	154.0	139.0	132.0
06	4.0	463.0	5.0	28.0
07	475.0	11.0	8.0	6.0
08	423.0	4.0	72.0	1.0
09	461.0	0.0	34.0	5.0
10	4.0	3.0	484.0	9.0
11	8.0	4.0	191.0	297.0
12	21.0	248.0	64.0	167.0
13	9.0	418.0	8.0	65.0
14	351.0	32.0	65.0	52.0

PWM

	A	C	G	T
01	0.119	0.016	0.344	-0.805
02	0.595	-1.975	0.46	-0.771
03	-1.215	-2.484	1.213	-1.358
04	-0.313	-1.242	0.263	0.519
05	-0.503	0.206	0.105	0.054
06	-3.126	1.3	-2.961	-1.454
07	1.326	-2.311	-2.584	-2.819
08	1.21	-3.126	-0.543	-3.903
09	1.296	-4.4	-1.27	-2.961
10	-3.126	-3.325	1.345	-2.484
11	-2.584	-3.126	0.42	0.858
12	-1.725	0.679	-0.658	0.287
13	-2.484	1.199	-2.584	-0.643
14	1.025	-1.328	-0.643	-0.86