We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorONECUT1
(GeneCards)
ModelHNF6_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
B
Motif rank
0
ConsensushbYATTGATYd
Best auROC (human)
Best auROC (mouse)0.976
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)24
Aligned words512
TF familyHD-CUT factors {3.1.9}
TF subfamilyONECUT {3.1.9.1}
HGNCHGNC:8138
EntrezGeneGeneID:3175
(SSTAR profile)
UniProt IDHNF6_HUMAN
UniProt ACQ9UBC0
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.428395
0.0005 5.398569999999999
0.0001 8.36759
GTEx tissue expression atlas ONECUT1 expression
ReMap ChIP-seq dataset list ONECUT1 datasets
Motifs in JASPAR
MA0679.1 (ONECUT1; Homo sapiens)
PCM
ACGT
01126.075.065.0234.0
0254.099.0112.0235.0
0320.088.080.0312.0
04496.03.00.01.0
052.00.05.0493.0
065.078.02.0415.0
072.00.0498.00.0
08497.01.00.02.0
093.09.02.0486.0
101.0161.06.0332.0
1171.068.0150.0211.0
PWM
ACGT
010.008-0.503-0.6430.621
02-0.823-0.23-0.1080.626
03-1.77-0.346-0.4390.907
041.369-3.325-4.4-3.903
05-3.573-4.4-2.9611.363
06-2.961-0.464-3.5731.191
07-3.573-4.41.373-4.4
081.371-3.903-4.4-3.573
09-3.325-2.484-3.5731.349
10-3.9030.25-2.8190.969
11-0.556-0.5990.180.519