Transcription factor | Onecut1 | ||||||||
Model | HNF6_MOUSE.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 18 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | dbTATTGATTddYbdddn | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | 0.977 | ||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | 24 | ||||||||
Aligned words | 306 | ||||||||
TF family | HD-CUT factors {3.1.9} | ||||||||
TF subfamily | ONECUT {3.1.9.1} | ||||||||
MGI | MGI:1196423 | ||||||||
EntrezGene | GeneID:15379 (SSTAR profile) | ||||||||
UniProt ID | HNF6_MOUSE | ||||||||
UniProt AC | O08755 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Onecut1 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 11.0 | 10.0 | 31.0 | 22.0 | 4.0 | 12.0 | 2.0 | 19.0 | 6.0 | 11.0 | 10.0 | 23.0 | 9.0 | 11.0 | 22.0 | 82.0 |
02 | 0.0 | 1.0 | 1.0 | 28.0 | 0.0 | 1.0 | 2.0 | 41.0 | 0.0 | 7.0 | 4.0 | 54.0 | 4.0 | 9.0 | 28.0 | 105.0 |
03 | 4.0 | 0.0 | 0.0 | 0.0 | 18.0 | 0.0 | 0.0 | 0.0 | 35.0 | 0.0 | 0.0 | 0.0 | 228.0 | 0.0 | 0.0 | 0.0 |
04 | 0.0 | 0.0 | 0.0 | 285.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
05 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 28.0 | 0.0 | 257.0 |
06 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 28.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 257.0 | 0.0 |
07 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 285.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.0 | 0.0 | 285.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
09 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 57.0 | 3.0 | 225.0 |
10 | 0.0 | 0.0 | 0.0 | 0.0 | 7.0 | 11.0 | 13.0 | 26.0 | 0.0 | 0.0 | 1.0 | 2.0 | 28.0 | 9.0 | 83.0 | 105.0 |
11 | 11.0 | 4.0 | 9.0 | 11.0 | 13.0 | 6.0 | 0.0 | 1.0 | 71.0 | 8.0 | 10.0 | 8.0 | 19.0 | 25.0 | 36.0 | 53.0 |
12 | 10.0 | 19.0 | 5.0 | 80.0 | 7.0 | 12.0 | 0.0 | 24.0 | 10.0 | 3.0 | 7.0 | 35.0 | 10.0 | 15.0 | 6.0 | 42.0 |
13 | 4.0 | 8.0 | 11.0 | 14.0 | 13.0 | 12.0 | 1.0 | 23.0 | 2.0 | 4.0 | 5.0 | 7.0 | 13.0 | 26.0 | 33.0 | 109.0 |
14 | 7.0 | 2.0 | 14.0 | 9.0 | 26.0 | 4.0 | 3.0 | 17.0 | 11.0 | 12.0 | 19.0 | 8.0 | 13.0 | 11.0 | 63.0 | 66.0 |
15 | 25.0 | 13.0 | 10.0 | 9.0 | 12.0 | 6.0 | 1.0 | 10.0 | 57.0 | 13.0 | 15.0 | 14.0 | 19.0 | 15.0 | 32.0 | 34.0 |
16 | 27.0 | 10.0 | 18.0 | 58.0 | 17.0 | 5.0 | 1.0 | 24.0 | 14.0 | 8.0 | 17.0 | 19.0 | 5.0 | 14.0 | 10.0 | 38.0 |
17 | 21.0 | 6.0 | 10.0 | 26.0 | 10.0 | 11.0 | 0.0 | 16.0 | 4.0 | 12.0 | 14.0 | 16.0 | 13.0 | 20.0 | 24.0 | 82.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -0.47 | -0.562 | 0.546 | 0.207 | -1.429 | -0.386 | -2.044 | 0.063 | -1.051 | -0.47 | -0.562 | 0.251 | -0.664 | -0.47 | 0.207 | 1.511 |
02 | -3.94 | -2.597 | -2.597 | 0.445 | -3.94 | -2.597 | -2.044 | 0.823 | -3.94 | -0.904 | -1.429 | 1.096 | -1.429 | -0.664 | 0.445 | 1.758 |
03 | -1.429 | -3.94 | -3.94 | -3.94 | 0.01 | -3.94 | -3.94 | -3.94 | 0.666 | -3.94 | -3.94 | -3.94 | 2.531 | -3.94 | -3.94 | -3.94 |
04 | -3.94 | -3.94 | -3.94 | 2.754 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 |
05 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | 0.445 | -3.94 | 2.651 |
06 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | 0.445 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | 2.651 | -3.94 |
07 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | 2.754 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 |
08 | -3.94 | -3.94 | -3.94 | 2.754 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 |
09 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | -3.94 | 1.15 | -1.69 | 2.518 |
10 | -3.94 | -3.94 | -3.94 | -3.94 | -0.904 | -0.47 | -0.308 | 0.372 | -3.94 | -3.94 | -2.597 | -2.044 | 0.445 | -0.664 | 1.524 | 1.758 |
11 | -0.47 | -1.429 | -0.664 | -0.47 | -0.308 | -1.051 | -3.94 | -2.597 | 1.368 | -0.777 | -0.562 | -0.777 | 0.063 | 0.333 | 0.694 | 1.077 |
12 | -0.562 | 0.063 | -1.222 | 1.487 | -0.904 | -0.386 | -3.94 | 0.293 | -0.562 | -1.69 | -0.904 | 0.666 | -0.562 | -0.168 | -1.051 | 0.847 |
13 | -1.429 | -0.777 | -0.47 | -0.236 | -0.308 | -0.386 | -2.597 | 0.251 | -2.044 | -1.429 | -1.222 | -0.904 | -0.308 | 0.372 | 0.608 | 1.795 |
14 | -0.904 | -2.044 | -0.236 | -0.664 | 0.372 | -1.429 | -1.69 | -0.046 | -0.47 | -0.386 | 0.063 | -0.777 | -0.308 | -0.47 | 1.249 | 1.295 |
15 | 0.333 | -0.308 | -0.562 | -0.664 | -0.386 | -1.051 | -2.597 | -0.562 | 1.15 | -0.308 | -0.168 | -0.236 | 0.063 | -0.168 | 0.577 | 0.637 |
16 | 0.409 | -0.562 | 0.01 | 1.167 | -0.046 | -1.222 | -2.597 | 0.293 | -0.236 | -0.777 | -0.046 | 0.063 | -1.222 | -0.236 | -0.562 | 0.747 |
17 | 0.162 | -1.051 | -0.562 | 0.372 | -0.562 | -0.47 | -3.94 | -0.105 | -1.429 | -0.386 | -0.236 | -0.105 | -0.308 | 0.114 | 0.293 | 1.511 |