Model info
| Transcription factor | Onecut1 | ||||||||
| Model | HNF6_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hbYATTGATYd | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.976 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 24 | ||||||||
| Aligned words | 512 | ||||||||
| TF family | HD-CUT factors {3.1.9} | ||||||||
| TF subfamily | ONECUT {3.1.9.1} | ||||||||
| MGI | MGI:1196423 | ||||||||
| EntrezGene | GeneID:15379 (SSTAR profile) | ||||||||
| UniProt ID | HNF6_MOUSE | ||||||||
| UniProt AC | O08755 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Onecut1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 126.0 | 75.0 | 65.0 | 234.0 |
| 02 | 54.0 | 99.0 | 112.0 | 235.0 |
| 03 | 20.0 | 88.0 | 80.0 | 312.0 |
| 04 | 496.0 | 3.0 | 0.0 | 1.0 |
| 05 | 2.0 | 0.0 | 5.0 | 493.0 |
| 06 | 5.0 | 78.0 | 2.0 | 415.0 |
| 07 | 2.0 | 0.0 | 498.0 | 0.0 |
| 08 | 497.0 | 1.0 | 0.0 | 2.0 |
| 09 | 3.0 | 9.0 | 2.0 | 486.0 |
| 10 | 1.0 | 161.0 | 6.0 | 332.0 |
| 11 | 71.0 | 68.0 | 150.0 | 211.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.008 | -0.503 | -0.643 | 0.621 |
| 02 | -0.823 | -0.23 | -0.108 | 0.626 |
| 03 | -1.77 | -0.346 | -0.439 | 0.907 |
| 04 | 1.369 | -3.325 | -4.4 | -3.903 |
| 05 | -3.573 | -4.4 | -2.961 | 1.363 |
| 06 | -2.961 | -0.464 | -3.573 | 1.191 |
| 07 | -3.573 | -4.4 | 1.373 | -4.4 |
| 08 | 1.371 | -3.903 | -4.4 | -3.573 |
| 09 | -3.325 | -2.484 | -3.573 | 1.349 |
| 10 | -3.903 | 0.25 | -2.819 | 0.969 |
| 11 | -0.556 | -0.599 | 0.18 | 0.519 |