We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHOMEZ
(GeneCards)
ModelHOMEZ_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length15
Quality
D
Motif rank
0
ConsensusddWWATCGTTTWhhh
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words275
TF familyHD-ZF factors {3.1.8}
TF subfamilyZHX {3.1.8.5}
HGNCHGNC:20164
EntrezGeneGeneID:57594
(SSTAR profile)
UniProt IDHOMEZ_HUMAN
UniProt ACQ8IX15
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.10296
0.0005 4.15966
0.0001 6.27551
GTEx tissue expression atlas HOMEZ expression
ReMap ChIP-seq dataset list HOMEZ datasets
Motifs in JASPAR
PCM
ACGT
01111.037.046.080.0
02130.7522.7524.7595.75
03153.011.013.097.0
04182.2533.2519.2539.25
05271.03.00.00.0
060.00.00.0274.0
070.0274.00.00.0
080.00.0274.00.0
0916.00.020.0238.0
1049.00.00.0225.0
1159.00.01.0214.0
1250.2516.2510.25197.25
1359.562.531.5120.5
1453.7554.7545.75119.75
1575.7547.7543.75106.75
PWM
ACGT
010.475-0.599-0.3880.152
020.637-1.063-0.9830.329
030.792-1.729-1.580.342
040.966-0.702-1.219-0.542
051.36-2.765-3.908-3.908
06-3.908-3.908-3.9081.371
07-3.9081.371-3.908-3.908
08-3.908-3.9081.371-3.908
09-1.39-3.908-1.1841.231
10-0.327-3.908-3.9081.175
11-0.146-3.908-3.371.125
12-0.303-1.376-1.7921.044
13-0.138-0.09-0.7540.556
14-0.237-0.219-0.3940.55
150.099-0.352-0.4370.436