We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHSF1
(GeneCards)
ModelHSF1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
0
ConsensusbRGAAnbWWCYRGAR
Best auROC (human)0.997
Best auROC (mouse)0.984
Peak sets in benchmark (human)56
Peak sets in benchmark (mouse)32
Aligned words510
TF familyHSF factors {3.4.1}
TF subfamilyHSF1 (HSTF1) {3.4.1.0.1}
HGNCHGNC:5224
EntrezGeneGeneID:3297
(SSTAR profile)
UniProt IDHSF1_HUMAN
UniProt ACQ00613
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.7850099999999998
0.0005 4.94471
0.0001 7.37701
GTEx tissue expression atlas HSF1 expression
ReMap ChIP-seq dataset list HSF1 datasets
Motifs in JASPAR
MA0486.1 (HSF1; Homo sapiens)
MA0486.2 (HSF1; Homo sapiens)
PCM
ACGT
0174.0114.0112.0200.0
02211.028.0245.016.0
036.03.0489.02.0
04475.010.010.05.0
05425.017.027.031.0
06122.094.0148.0136.0
0778.0139.0202.081.0
0854.044.030.0372.0
0958.08.044.0390.0
1026.0472.02.00.0
116.0160.016.0318.0
12282.030.0184.04.0
133.04.0493.00.0
14456.015.015.014.0
15394.033.051.022.0
PWM
ACGT
01-0.516-0.091-0.1080.465
020.519-1.4540.667-1.975
03-2.819-3.3251.355-3.573
041.326-2.394-2.394-2.961
051.215-1.92-1.489-1.358
06-0.024-0.2810.1670.083
07-0.4640.1050.475-0.427
08-0.823-1.022-1.3891.082
09-0.754-2.584-1.0221.129
10-1.5251.32-3.573-4.4
11-2.8190.244-1.9750.926
120.807-1.3890.383-3.126
13-3.325-3.1261.363-4.4
141.285-2.034-2.034-2.096
151.14-1.298-0.879-1.681