We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTCF12
(GeneCards)
ModelHTF4_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusnvnnvCAGSTGYn
Best auROC (human)0.936
Best auROC (mouse)0.98
Peak sets in benchmark (human)49
Peak sets in benchmark (mouse)10
Aligned words508
TF familyE2A-related factors {1.2.1}
TF subfamilyHTF-4 (TCF-12, HEB) {1.2.1.0.3}
HGNCHGNC:11623
EntrezGeneGeneID:6938
(SSTAR profile)
UniProt IDHTF4_HUMAN
UniProt ACQ99081
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.596565
0.0005 11.012910000000002
0.0001 15.851825
GTEx tissue expression atlas TCF12 expression
ReMap ChIP-seq dataset list TCF12 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0173.014.076.07.040.010.010.019.037.014.066.07.022.014.077.014.0
0266.027.057.022.025.013.01.013.087.057.037.048.014.09.013.011.0
0382.032.046.032.039.027.011.029.053.024.017.014.023.020.032.019.0
0494.022.080.01.061.031.09.02.019.042.041.04.018.019.055.02.0
053.0188.01.00.03.0110.00.01.05.0180.00.00.00.09.00.00.0
0611.00.00.00.0485.00.02.00.01.00.00.00.01.00.00.00.0
071.00.0496.01.00.00.00.00.00.00.02.00.00.00.00.00.0
081.00.00.00.00.00.00.00.089.0140.0265.04.01.00.00.00.0
092.00.00.089.04.02.00.0134.01.03.01.0260.00.00.00.04.0
100.00.07.00.01.00.04.00.01.00.00.00.08.03.0472.04.0
114.05.00.01.01.01.00.01.015.0198.052.0218.01.01.01.01.0
127.03.05.06.0113.024.09.059.04.027.04.018.014.042.075.090.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.841-0.7880.881-1.4540.244-1.114-1.114-0.490.167-0.7880.741-1.454-0.346-0.7880.894-0.788
020.741-0.1440.595-0.346-0.22-0.86-3.126-0.861.0160.5950.1670.425-0.788-1.215-0.86-1.022
030.9570.0230.3830.0230.219-0.144-1.022-0.0740.523-0.26-0.599-0.788-0.302-0.4390.023-0.49
041.093-0.3460.932-3.1260.663-0.008-1.215-2.584-0.490.2930.269-1.975-0.543-0.490.56-2.584
05-2.2341.784-3.126-4.4-2.2341.25-4.4-3.126-1.771.741-4.4-4.4-4.4-1.215-4.4-4.4
06-1.022-4.4-4.4-4.42.731-4.4-2.584-4.4-3.126-4.4-4.4-4.4-3.126-4.4-4.4-4.4
07-3.126-4.42.753-3.126-4.4-4.4-4.4-4.4-4.4-4.4-2.584-4.4-4.4-4.4-4.4-4.4
08-3.126-4.4-4.4-4.4-4.4-4.4-4.4-4.41.0391.492.127-1.975-3.126-4.4-4.4-4.4
09-2.584-4.4-4.41.039-1.975-2.584-4.41.446-3.126-2.234-3.1262.108-4.4-4.4-4.4-1.975
10-4.4-4.4-1.454-4.4-3.126-4.4-1.975-4.4-3.126-4.4-4.4-4.4-1.328-2.2342.703-1.975
11-1.975-1.77-4.4-3.126-3.126-3.126-4.4-3.126-0.7211.8360.5041.932-3.126-3.126-3.126-3.126
12-1.454-2.234-1.77-1.61.276-0.26-1.2150.63-1.975-0.144-1.975-0.543-0.7880.2930.8681.05