We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTCF12
(GeneCards)
ModelHTF4_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusnSCAGSTGKS
Best auROC (human)0.915
Best auROC (mouse)0.987
Peak sets in benchmark (human)49
Peak sets in benchmark (mouse)10
Aligned words502
TF familyE2A-related factors {1.2.1}
TF subfamilyHTF-4 (TCF-12, HEB) {1.2.1.0.3}
HGNCHGNC:11623
EntrezGeneGeneID:6938
(SSTAR profile)
UniProt IDHTF4_HUMAN
UniProt ACQ99081
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.891395
0.0005 5.764195
0.0001 7.557955
GTEx tissue expression atlas TCF12 expression
ReMap ChIP-seq dataset list TCF12 datasets
Motifs in JASPAR
MA0521.1 (Tcf12; Mus musculus)
PCM
ACGT
01148.060.0131.0161.0
0271.0170.0247.012.0
0311.0474.011.04.0
04422.07.03.068.0
057.060.0419.014.0
0628.0305.0159.08.0
079.00.05.0486.0
082.04.0470.024.0
0949.016.0159.0276.0
109.080.0337.074.0
PWM
ACGT
010.167-0.7210.0460.25
02-0.5560.3040.675-2.234
03-2.3111.324-2.311-3.126
041.208-2.694-3.325-0.599
05-2.694-0.7211.201-2.096
06-1.4540.8850.238-2.584
07-2.484-4.4-2.9611.349
08-3.573-3.1261.315-1.6
09-0.918-1.9750.2380.785
10-2.484-0.4390.984-0.516