Transcription factor | TCF12 (GeneCards) | ||||||||
Model | HTF4_HUMAN.H11MO.0.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 10 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nSCAGSTGKS | ||||||||
Best auROC (human) | 0.915 | ||||||||
Best auROC (mouse) | 0.987 | ||||||||
Peak sets in benchmark (human) | 49 | ||||||||
Peak sets in benchmark (mouse) | 10 | ||||||||
Aligned words | 502 | ||||||||
TF family | E2A-related factors {1.2.1} | ||||||||
TF subfamily | HTF-4 (TCF-12, HEB) {1.2.1.0.3} | ||||||||
HGNC | HGNC:11623 | ||||||||
EntrezGene | GeneID:6938 (SSTAR profile) | ||||||||
UniProt ID | HTF4_HUMAN | ||||||||
UniProt AC | Q99081 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | TCF12 expression | ||||||||
ReMap ChIP-seq dataset list | TCF12 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 148.0 | 60.0 | 131.0 | 161.0 |
02 | 71.0 | 170.0 | 247.0 | 12.0 |
03 | 11.0 | 474.0 | 11.0 | 4.0 |
04 | 422.0 | 7.0 | 3.0 | 68.0 |
05 | 7.0 | 60.0 | 419.0 | 14.0 |
06 | 28.0 | 305.0 | 159.0 | 8.0 |
07 | 9.0 | 0.0 | 5.0 | 486.0 |
08 | 2.0 | 4.0 | 470.0 | 24.0 |
09 | 49.0 | 16.0 | 159.0 | 276.0 |
10 | 9.0 | 80.0 | 337.0 | 74.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.167 | -0.721 | 0.046 | 0.25 |
02 | -0.556 | 0.304 | 0.675 | -2.234 |
03 | -2.311 | 1.324 | -2.311 | -3.126 |
04 | 1.208 | -2.694 | -3.325 | -0.599 |
05 | -2.694 | -0.721 | 1.201 | -2.096 |
06 | -1.454 | 0.885 | 0.238 | -2.584 |
07 | -2.484 | -4.4 | -2.961 | 1.349 |
08 | -3.573 | -3.126 | 1.315 | -1.6 |
09 | -0.918 | -1.975 | 0.238 | 0.785 |
10 | -2.484 | -0.439 | 0.984 | -0.516 |