We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTcf12
ModelHTF4_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
0
ConsensusnvCAGSTGKKnnndn
Best auROC (human)0.918
Best auROC (mouse)0.988
Peak sets in benchmark (human)49
Peak sets in benchmark (mouse)10
Aligned words529
TF familyE2A-related factors {1.2.1}
TF subfamilyHTF-4 (TCF-12, HEB) {1.2.1.0.3}
MGIMGI:101877
EntrezGeneGeneID:21406
(SSTAR profile)
UniProt IDHTF4_MOUSE
UniProt ACQ61286
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.89061
0.0005 11.664560000000002
0.0001 15.38671
GTEx tissue expression atlas Tcf12 expression
Motifs in JASPAR
MA0521.1 (Tcf12; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0142.026.091.09.023.030.018.04.013.041.068.02.012.034.082.05.0
021.081.03.05.05.0125.00.01.010.0240.08.01.01.013.02.04.0
0310.03.00.04.0398.02.06.053.010.01.01.01.07.00.00.04.0
041.074.0342.08.00.00.06.00.01.01.04.01.01.013.043.05.0
051.02.00.00.04.080.01.03.024.0220.0146.05.00.07.07.00.0
060.01.00.028.06.00.02.0301.00.01.03.0150.00.00.00.08.0
070.00.05.01.00.00.02.00.00.00.05.00.03.05.0467.012.0
080.01.01.01.01.01.01.02.041.09.0147.0282.02.01.02.08.0
093.04.034.03.01.02.05.04.01.029.097.024.07.034.0206.046.0
102.03.01.06.012.018.02.037.057.0105.075.0105.09.010.030.028.0
1117.08.035.020.053.022.05.056.046.019.014.029.050.027.048.051.0
1279.028.028.031.017.015.06.038.014.017.041.030.017.022.052.065.0
1372.06.032.017.048.015.04.015.046.019.045.017.031.029.059.045.0
1421.091.052.033.020.026.07.016.031.048.040.021.019.026.018.031.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.293-0.1811.061-1.215-0.302-0.04-0.543-1.975-0.860.2690.771-2.584-0.9380.0830.957-1.77
02-3.1260.945-2.234-1.77-1.771.377-4.4-3.126-1.1142.028-1.328-3.126-3.126-0.86-2.584-1.975
03-1.114-2.234-4.4-1.9752.533-2.584-1.60.523-1.114-3.126-3.126-3.126-1.454-4.4-4.4-1.975
04-3.1260.8552.382-1.328-4.4-4.4-1.6-4.4-3.126-3.126-1.975-3.126-3.126-0.860.316-1.77
05-3.126-2.584-4.4-4.4-1.9750.932-3.126-2.234-0.261.9411.532-1.77-4.4-1.454-1.454-4.4
06-4.4-3.126-4.4-0.108-1.6-4.4-2.5842.254-4.4-3.126-2.2341.559-4.4-4.4-4.4-1.328
07-4.4-4.4-1.77-3.126-4.4-4.4-2.584-4.4-4.4-4.4-1.77-4.4-2.234-1.772.693-0.938
08-4.4-3.126-3.126-3.126-3.126-3.126-3.126-2.5840.269-1.2151.5392.189-2.584-3.126-2.584-1.328
09-2.234-1.9750.083-2.234-3.126-2.584-1.77-1.975-3.126-0.0741.124-0.26-1.4540.0831.8750.383
10-2.584-2.234-3.126-1.6-0.938-0.543-2.5840.1670.5951.2030.8681.203-1.215-1.114-0.04-0.108
11-0.599-1.3280.112-0.4390.523-0.346-1.770.5780.383-0.49-0.788-0.0740.465-0.1440.4250.485
120.92-0.108-0.108-0.008-0.599-0.721-1.60.193-0.788-0.5990.269-0.04-0.599-0.3460.5040.726
130.828-1.60.023-0.5990.425-0.721-1.975-0.7210.383-0.490.361-0.599-0.008-0.0740.630.361
14-0.3921.0610.5040.054-0.439-0.181-1.454-0.658-0.0080.4250.244-0.392-0.49-0.181-0.543-0.008