Model info
| Transcription factor | Tcf12 | ||||||||
| Model | HTF4_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dSCAGSTGKb | ||||||||
| Best auROC (human) | 0.897 | ||||||||
| Best auROC (mouse) | 0.986 | ||||||||
| Peak sets in benchmark (human) | 49 | ||||||||
| Peak sets in benchmark (mouse) | 10 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | E2A-related factors {1.2.1} | ||||||||
| TF subfamily | HTF-4 (TCF-12, HEB) {1.2.1.0.3} | ||||||||
| MGI | MGI:101877 | ||||||||
| EntrezGene | GeneID:21406 (SSTAR profile) | ||||||||
| UniProt ID | HTF4_MOUSE | ||||||||
| UniProt AC | Q61286 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Tcf12 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 205.0 | 28.0 | 178.0 | 89.0 |
| 02 | 78.0 | 85.0 | 328.0 | 9.0 |
| 03 | 8.0 | 418.0 | 68.0 | 6.0 |
| 04 | 486.0 | 2.0 | 5.0 | 7.0 |
| 05 | 4.0 | 2.0 | 489.0 | 5.0 |
| 06 | 76.0 | 120.0 | 295.0 | 9.0 |
| 07 | 56.0 | 7.0 | 22.0 | 415.0 |
| 08 | 22.0 | 12.0 | 454.0 | 12.0 |
| 09 | 48.0 | 30.0 | 268.0 | 154.0 |
| 10 | 57.0 | 110.0 | 265.0 | 68.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.49 | -1.454 | 0.35 | -0.335 |
| 02 | -0.464 | -0.38 | 0.957 | -2.484 |
| 03 | -2.584 | 1.199 | -0.599 | -2.819 |
| 04 | 1.349 | -3.573 | -2.961 | -2.694 |
| 05 | -3.126 | -3.573 | 1.355 | -2.961 |
| 06 | -0.49 | -0.04 | 0.852 | -2.484 |
| 07 | -0.788 | -2.694 | -1.681 | 1.191 |
| 08 | -1.681 | -2.234 | 1.281 | -2.234 |
| 09 | -0.938 | -1.389 | 0.756 | 0.206 |
| 10 | -0.771 | -0.126 | 0.745 | -0.599 |