HXA10_HUMAN.H11MO.0.C motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

HOXA10
(GeneCards)

Model

HXA10_HUMAN.H11MO.0.C

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

Integrative

Model release

HOCOMOCOv9

Model length

12

Quality

C

Motif rank

0

Consensus

dnYnRTTTATGh

Best auROC (human)

Best auROC (mouse)

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

Aligned words

10

TF family

HOX-related factors {3.1.1}

TF subfamily

HOX9-13 {3.1.1.8}

HGNC

EntrezGene

GeneID:3206
(SSTAR profile)

UniProt ID

UniProt AC

P31260
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	5.5354149999999995
0.0005	6.17003
0.0001	7.446420000000001

GTEx tissue expression atlas

HOXA10 expression

ReMap ChIP-seq dataset list

HOXA10 datasets

Motifs in JASPAR

MA0899.1 (HOXA10; Homo sapiens)

PCM

	A	C	G	T
01	1.813	0.714	3.791	3.681
02	5.165	1.978	1.978	0.879
03	0.0	2.967	0.989	6.044
04	3.956	0.989	3.956	1.099
05	5.055	0.879	3.077	0.989
06	0.879	0.0	0.0	9.121
07	0.0	0.0	0.0	10.0
08	0.989	0.0	0.0	9.011
09	10.0	0.0	0.0	0.0
10	0.0	0.0	0.0	10.0
11	0.989	0.0	8.022	0.989
12	4.176	1.758	0.989	3.077

PWM

	A	C	G	T
01	-0.253	-0.869	0.351	0.325
02	0.624	-0.186	-0.186	-0.749
03	-1.676	0.141	-0.676	0.767
04	0.388	-0.676	0.388	-0.608
05	0.605	-0.749	0.172	-0.676
06	-0.749	-1.676	-1.676	1.148
07	-1.676	-1.676	-1.676	1.235
08	-0.676	-1.676	-1.676	1.137
09	1.235	-1.676	-1.676	-1.676
10	-1.676	-1.676	-1.676	1.235
11	-0.676	-1.676	1.028	-0.676
12	0.435	-0.276	-0.676	0.172