We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHOXA10
(GeneCards)
ModelHXA10_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length12
Quality
C
Motif rank
0
ConsensusdnYnRTTTATGh
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words10
TF familyHOX-related factors {3.1.1}
TF subfamilyHOX9-13 {3.1.1.8}
HGNCHGNC:5100
EntrezGeneGeneID:3206
(SSTAR profile)
UniProt IDHXA10_HUMAN
UniProt ACP31260
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.5354149999999995
0.0005 6.17003
0.0001 7.446420000000001
GTEx tissue expression atlas HOXA10 expression
ReMap ChIP-seq dataset list HOXA10 datasets
Motifs in JASPAR
PCM
ACGT
011.8130.7143.7913.681
025.1651.9781.9780.879
030.02.9670.9896.044
043.9560.9893.9561.099
055.0550.8793.0770.989
060.8790.00.09.121
070.00.00.010.0
080.9890.00.09.011
0910.00.00.00.0
100.00.00.010.0
110.9890.08.0220.989
124.1761.7580.9893.077
PWM
ACGT
01-0.253-0.8690.3510.325
020.624-0.186-0.186-0.749
03-1.6760.141-0.6760.767
040.388-0.6760.388-0.608
050.605-0.7490.172-0.676
06-0.749-1.676-1.6761.148
07-1.676-1.676-1.6761.235
08-0.676-1.676-1.6761.137
091.235-1.676-1.676-1.676
10-1.676-1.676-1.6761.235
11-0.676-1.6761.028-0.676
120.435-0.276-0.6760.172