We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHOXA11
(GeneCards)
ModelHXA11_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length13
Quality
D
Motif rank
0
ConsensusWWWhnWTTTAhdd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words2642
TF familyHOX-related factors {3.1.1}
TF subfamilyHOX9-13 {3.1.1.8}
HGNCHGNC:5101
EntrezGeneGeneID:3207
(SSTAR profile)
UniProt IDHXA11_HUMAN
UniProt ACP31270
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.29676
0.0005 7.053660000000001
0.0001 8.460225
GTEx tissue expression atlas HOXA11 expression
ReMap ChIP-seq dataset list HOXA11 datasets
Motifs in JASPAR
PCM
ACGT
01696.25180.25132.251633.25
021494.0241.0152.0755.0
031754.25349.25163.25375.25
041467.75460.75268.75444.75
05908.0436.0575.0723.0
06297.0139.0189.02017.0
070.00.02.02640.0
080.01.00.02641.0
09790.00.03.01849.0
102595.7514.7516.7514.75
11377.25805.25301.251158.25
12351.75345.751319.75624.75
131066.75359.75762.75452.75
PWM
ACGT
010.053-1.291-1.5960.904
020.815-1.003-1.4590.133
030.975-0.635-1.389-0.563
040.797-0.359-0.895-0.394
050.317-0.414-0.1380.09
06-0.796-1.547-1.2441.114
07-5.818-5.818-5.1171.383
08-5.818-5.407-5.8181.384
090.179-5.818-4.8931.027
101.366-3.679-3.566-3.679
11-0.5580.198-0.7820.56
12-0.627-0.6450.691-0.055
130.478-0.6050.144-0.376