Model info
| Transcription factor | Hoxa13 | ||||||||
| Model | HXA13_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 11 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vdTWTTATKGS | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 18 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | HOX9-13 {3.1.1.8} | ||||||||
| MGI | MGI:96173 | ||||||||
| EntrezGene | GeneID:15398 (SSTAR profile) | ||||||||
| UniProt ID | HXA13_MOUSE | ||||||||
| UniProt AC | Q62424 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Hoxa13 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 3.185 | 3.302 | 8.562 | 1.899 |
| 02 | 5.844 | 1.052 | 6.312 | 3.74 |
| 03 | 0.0 | 0.0 | 3.273 | 13.675 |
| 04 | 4.909 | 0.0 | 2.104 | 9.935 |
| 05 | 1.052 | 0.0 | 0.0 | 15.896 |
| 06 | 4.442 | 0.0 | 0.0 | 12.506 |
| 07 | 16.948 | 0.0 | 0.0 | 0.0 |
| 08 | 0.0 | 2.922 | 0.0 | 14.026 |
| 09 | 1.87 | 1.052 | 3.974 | 10.052 |
| 10 | 0.0 | 1.052 | 12.974 | 2.922 |
| 11 | 1.695 | 3.214 | 11.513 | 0.526 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.239 | -0.21 | 0.628 | -0.64 |
| 02 | 0.281 | -1.033 | 0.35 | -0.106 |
| 03 | -1.944 | -1.944 | -0.217 | 1.068 |
| 04 | 0.127 | -1.944 | -0.565 | 0.767 |
| 05 | -1.033 | -1.944 | -1.944 | 1.211 |
| 06 | 0.041 | -1.944 | -1.944 | 0.983 |
| 07 | 1.273 | -1.944 | -1.944 | -1.944 |
| 08 | -1.944 | -0.309 | -1.944 | 1.092 |
| 09 | -0.651 | -1.033 | -0.055 | 0.778 |
| 10 | -1.944 | -1.033 | 1.018 | -0.309 |
| 11 | -0.722 | -0.232 | 0.905 | -1.388 |