We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHOXA2
(GeneCards)
ModelHXA2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensusnvTMATTAdnd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words14435
TF familyHOX-related factors {3.1.1}
TF subfamilyHOX2 {3.1.1.2}
HGNCHGNC:5103
EntrezGeneGeneID:3199
(SSTAR profile)
UniProt IDHXA2_HUMAN
UniProt ACO43364
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.431089999999999
0.0005 6.32965
0.0001 7.883645
GTEx tissue expression atlas HOXA2 expression
ReMap ChIP-seq dataset list HOXA2 datasets
Motifs in JASPAR
PCM
ACGT
013453.1722571.4154313.4743302.164
022344.6972166.547708.5691420.42
03533.0981473.738433.82311199.566
0410452.1132322.288684.985180.839
0513438.56560.608141.0530.0
0680.8110.041.04513518.369
070.6491.68984.55813463.339
0812945.073228.122182.505284.525
094911.422727.9016232.6311768.271
101871.4734471.7383183.6364113.379
114175.3351646.6685088.4932729.729
PWM
ACGT
010.013-0.2820.235-0.032
02-0.374-0.4530.815-0.875
03-1.852-0.838-2.0571.189
041.12-0.384-1.602-2.924
051.371-3.992-3.169-7.268
06-3.714-7.268-4.3641.377
07-7.03-3.591-3.671.373
081.333-2.695-2.915-2.476
090.365-1.5420.603-0.656
10-0.5990.271-0.0690.187
110.202-0.7270.4-0.222