Model info
| Transcription factor | HOXA2 (GeneCards) | ||||||||
| Model | HXA2_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nvTMATTAdnd | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 14435 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | HOX2 {3.1.1.2} | ||||||||
| HGNC | HGNC:5103 | ||||||||
| EntrezGene | GeneID:3199 (SSTAR profile) | ||||||||
| UniProt ID | HXA2_HUMAN | ||||||||
| UniProt AC | O43364 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | HOXA2 expression | ||||||||
| ReMap ChIP-seq dataset list | HOXA2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 3453.172 | 2571.415 | 4313.474 | 3302.164 |
| 02 | 2344.697 | 2166.54 | 7708.569 | 1420.42 |
| 03 | 533.098 | 1473.738 | 433.823 | 11199.566 |
| 04 | 10452.113 | 2322.288 | 684.985 | 180.839 |
| 05 | 13438.565 | 60.608 | 141.053 | 0.0 |
| 06 | 80.811 | 0.0 | 41.045 | 13518.369 |
| 07 | 0.64 | 91.689 | 84.558 | 13463.339 |
| 08 | 12945.073 | 228.122 | 182.505 | 284.525 |
| 09 | 4911.422 | 727.901 | 6232.631 | 1768.271 |
| 10 | 1871.473 | 4471.738 | 3183.636 | 4113.379 |
| 11 | 4175.335 | 1646.668 | 5088.493 | 2729.729 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.013 | -0.282 | 0.235 | -0.032 |
| 02 | -0.374 | -0.453 | 0.815 | -0.875 |
| 03 | -1.852 | -0.838 | -2.057 | 1.189 |
| 04 | 1.12 | -0.384 | -1.602 | -2.924 |
| 05 | 1.371 | -3.992 | -3.169 | -7.268 |
| 06 | -3.714 | -7.268 | -4.364 | 1.377 |
| 07 | -7.03 | -3.591 | -3.67 | 1.373 |
| 08 | 1.333 | -2.695 | -2.915 | -2.476 |
| 09 | 0.365 | -1.542 | 0.603 | -0.656 |
| 10 | -0.599 | 0.271 | -0.069 | 0.187 |
| 11 | 0.202 | -0.727 | 0.4 | -0.222 |