HXA7_HUMAN.H11MO.0.D motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

HOXA7
(GeneCards)

Model

HXA7_HUMAN.H11MO.0.D

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

Integrative

Model release

HOCOMOCOv9

Model length

15

Quality

D

Motif rank

0

Consensus

vhTMnMnMGAKTRvv

Best auROC (human)

Best auROC (mouse)

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

Aligned words

21

TF family

HOX-related factors {3.1.1}

TF subfamily

HOX6-7 {3.1.1.6}

HGNC

EntrezGene

GeneID:3204
(SSTAR profile)

UniProt ID

UniProt AC

P31268
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	5.19341
0.0005	5.80086
0.0001	7.06526

GTEx tissue expression atlas

HOXA7 expression

ReMap ChIP-seq dataset list

Motifs in JASPAR

PCM

	A	C	G	T
01	6.788	4.665	5.782	1.76
02	9.944	5.028	1.006	3.017
03	4.022	1.006	0.0	13.966
04	2.905	13.073	1.006	2.011
05	7.933	3.017	5.028	3.017
06	13.966	3.017	0.0	2.011
07	3.017	2.905	3.017	10.056
08	9.944	6.034	0.0	3.017
09	0.0	1.006	15.978	2.011
10	15.084	1.899	2.011	0.0
11	0.0	2.011	4.022	12.961
12	1.006	0.0	1.006	16.983
13	4.022	2.905	12.067	0.0
14	4.022	2.905	10.056	2.011
15	7.291	5.279	3.268	3.156

PWM

	A	C	G	T
01	0.316	-0.015	0.173	-0.787
02	0.666	0.05	-1.147	-0.379
03	-0.142	-1.147	-2.008	0.986
04	-0.41	0.923	-1.147	-0.691
05	0.458	-0.379	0.05	-0.379
06	0.986	-0.379	-2.008	-0.691
07	-0.379	-0.41	-0.379	0.677
08	0.666	0.21	-2.008	-0.379
09	-2.008	-1.147	1.114	-0.691
10	1.059	-0.733	-0.691	-2.008
11	-2.008	-0.691	-0.142	0.915
12	-1.147	-2.008	-1.147	1.173
13	-0.142	-0.41	0.848	-2.008
14	-0.142	-0.41	0.677	-0.691
15	0.381	0.092	-0.315	-0.343