Model info
| Transcription factor | Hoxa7 | ||||||||
| Model | HXA7_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 15 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vhTMnMnMGAKTRvv | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 21 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | HOX6-7 {3.1.1.6} | ||||||||
| MGI | MGI:96179 | ||||||||
| EntrezGene | GeneID:15404 (SSTAR profile) | ||||||||
| UniProt ID | HXA7_MOUSE | ||||||||
| UniProt AC | P02830 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Hoxa7 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 6.788 | 4.665 | 5.782 | 1.76 |
| 02 | 9.944 | 5.028 | 1.006 | 3.017 |
| 03 | 4.022 | 1.006 | 0.0 | 13.966 |
| 04 | 2.905 | 13.073 | 1.006 | 2.011 |
| 05 | 7.933 | 3.017 | 5.028 | 3.017 |
| 06 | 13.966 | 3.017 | 0.0 | 2.011 |
| 07 | 3.017 | 2.905 | 3.017 | 10.056 |
| 08 | 9.944 | 6.034 | 0.0 | 3.017 |
| 09 | 0.0 | 1.006 | 15.978 | 2.011 |
| 10 | 15.084 | 1.899 | 2.011 | 0.0 |
| 11 | 0.0 | 2.011 | 4.022 | 12.961 |
| 12 | 1.006 | 0.0 | 1.006 | 16.983 |
| 13 | 4.022 | 2.905 | 12.067 | 0.0 |
| 14 | 4.022 | 2.905 | 10.056 | 2.011 |
| 15 | 7.291 | 5.279 | 3.268 | 3.156 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.316 | -0.015 | 0.173 | -0.787 |
| 02 | 0.666 | 0.05 | -1.147 | -0.379 |
| 03 | -0.142 | -1.147 | -2.008 | 0.986 |
| 04 | -0.41 | 0.923 | -1.147 | -0.691 |
| 05 | 0.458 | -0.379 | 0.05 | -0.379 |
| 06 | 0.986 | -0.379 | -2.008 | -0.691 |
| 07 | -0.379 | -0.41 | -0.379 | 0.677 |
| 08 | 0.666 | 0.21 | -2.008 | -0.379 |
| 09 | -2.008 | -1.147 | 1.114 | -0.691 |
| 10 | 1.059 | -0.733 | -0.691 | -2.008 |
| 11 | -2.008 | -0.691 | -0.142 | 0.915 |
| 12 | -1.147 | -2.008 | -1.147 | 1.173 |
| 13 | -0.142 | -0.41 | 0.848 | -2.008 |
| 14 | -0.142 | -0.41 | 0.677 | -0.691 |
| 15 | 0.381 | 0.092 | -0.315 | -0.343 |