We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHOXA9
(GeneCards)
ModelHXA9_HUMAN.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
B
Motif rank
0
ConsensusndTGATTYAYddbh
Best auROC (human)0.914
Best auROC (mouse)0.76
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)8
Aligned words502
TF familyHOX-related factors {3.1.1}
TF subfamilyHOX9-13 {3.1.1.8}
HGNCHGNC:5109
EntrezGeneGeneID:3205
(SSTAR profile)
UniProt IDHXA9_HUMAN
UniProt ACP31269
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.21596
0.0005 12.110415
0.0001 16.00616
GTEx tissue expression atlas HOXA9 expression
ReMap ChIP-seq dataset list HOXA9 datasets
Motifs in JASPAR
MA0594.1 (Hoxa9; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0149.014.041.018.065.08.02.014.077.012.026.020.038.011.050.038.0
0254.00.07.0168.09.00.00.036.015.02.05.097.07.00.08.075.0
039.00.071.05.02.00.00.00.05.00.013.02.043.02.0316.015.0
0455.00.00.04.02.00.00.00.0399.01.00.00.022.00.00.00.0
059.02.07.0460.00.00.00.01.00.00.00.00.00.00.00.04.0
063.00.00.06.00.00.00.02.01.00.00.06.021.00.09.0435.0
073.00.02.020.00.00.00.00.05.00.03.01.021.052.041.0335.0
0828.01.00.00.035.016.01.00.046.00.00.00.0341.07.08.00.0
097.068.025.0350.018.03.02.01.00.02.01.06.00.00.00.00.0
101.00.03.021.030.00.011.032.07.01.04.016.059.015.0203.080.0
1115.04.065.013.05.00.02.09.077.014.086.044.028.07.072.042.0
125.063.027.030.08.08.01.08.029.0116.031.049.017.050.021.020.0
136.021.018.014.050.078.013.096.011.019.019.031.017.027.027.036.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.48-0.7540.303-0.5090.76-1.294-2.55-0.7540.929-0.904-0.147-0.4050.228-0.9880.50.228
020.576-4.371-1.4211.706-1.181-4.371-4.3710.174-0.687-2.55-1.7361.159-1.421-4.371-1.2940.902
03-1.181-4.3710.848-1.736-2.55-4.371-4.371-4.371-1.736-4.371-0.826-2.550.35-2.552.337-0.687
040.594-4.371-4.371-1.942-2.55-4.371-4.371-4.3712.57-3.094-4.371-4.371-0.312-4.371-4.371-4.371
05-1.181-2.55-1.4212.712-4.371-4.371-4.371-3.094-4.371-4.371-4.371-4.371-4.371-4.371-4.371-1.942
06-2.2-4.371-4.371-1.566-4.371-4.371-4.371-2.55-3.094-4.371-4.371-1.566-0.357-4.371-1.1812.656
07-2.2-4.371-2.55-0.405-4.371-4.371-4.371-4.371-1.736-4.371-2.2-3.094-0.3570.5390.3032.395
08-0.074-3.094-4.371-4.3710.146-0.624-3.094-4.3710.417-4.371-4.371-4.3712.413-1.421-1.294-4.371
09-1.4210.805-0.1862.439-0.509-2.2-2.55-3.094-4.371-2.55-3.094-1.566-4.371-4.371-4.371-4.371
10-3.094-4.371-2.2-0.357-0.006-4.371-0.9880.058-1.421-3.094-1.942-0.6240.664-0.6871.8950.967
11-0.687-1.9420.76-0.826-1.736-4.371-2.55-1.1810.929-0.7541.0390.373-0.074-1.4210.8620.327
12-1.7360.729-0.11-0.006-1.294-1.294-3.094-1.294-0.041.3370.0260.48-0.5640.5-0.357-0.405
13-1.566-0.357-0.509-0.7540.50.942-0.8261.148-0.988-0.456-0.4560.026-0.564-0.11-0.110.174