We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHoxa9
ModelHXA9_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusndTGAYKKATKdbn
Best auROC (human)0.906
Best auROC (mouse)0.819
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)8
Aligned words503
TF familyHOX-related factors {3.1.1}
TF subfamilyHOX9-13 {3.1.1.8}
MGIMGI:96180
EntrezGeneGeneID:15405
(SSTAR profile)
UniProt IDHXA9_MOUSE
UniProt ACP09631
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.431510000000001
0.0005 12.14141
0.0001 15.604525
GTEx tissue expression atlas Hoxa9 expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0178.09.047.015.077.010.016.017.076.05.040.017.040.05.025.023.0
0244.03.015.0209.04.01.00.024.022.02.02.0102.08.00.02.062.0
035.00.068.05.02.00.04.00.05.00.011.03.022.01.0361.013.0
0433.01.00.00.01.00.00.00.0426.02.011.05.020.00.00.01.0
0534.045.038.0363.00.00.01.02.07.01.01.02.00.01.00.05.0
0624.00.07.010.09.02.04.032.05.02.02.031.023.03.066.0280.0
074.07.026.024.00.00.07.00.011.03.053.012.012.067.0209.065.0
0826.01.00.00.076.00.00.01.0285.02.07.01.099.01.01.00.0
0912.031.037.0406.00.01.01.02.00.02.00.06.00.00.00.02.0
100.00.07.05.010.00.06.018.04.02.010.022.042.014.0281.079.0
117.02.044.03.05.00.02.09.070.013.0150.071.025.05.074.020.0
121.057.035.014.02.09.02.07.027.0135.052.056.014.032.037.020.0
136.023.010.05.056.055.028.094.027.028.034.037.08.034.023.032.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.907-1.2150.404-0.7210.894-1.114-0.658-0.5990.881-1.770.244-0.5990.244-1.77-0.22-0.302
020.339-2.234-0.7211.89-1.975-3.126-4.4-0.26-0.346-2.584-2.5841.174-1.328-4.4-2.5840.679
03-1.77-4.40.771-1.77-2.584-4.4-1.975-4.4-1.77-4.4-1.022-2.234-0.346-3.1262.436-0.86
040.054-3.126-4.4-4.4-3.126-4.4-4.4-4.42.601-2.584-1.022-1.77-0.439-4.4-4.4-3.126
050.0830.3610.1932.441-4.4-4.4-3.126-2.584-1.454-3.126-3.126-2.584-4.4-3.126-4.4-1.77
06-0.26-4.4-1.454-1.114-1.215-2.584-1.9750.023-1.77-2.584-2.584-0.008-0.302-2.2340.7412.182
07-1.975-1.454-0.181-0.26-4.4-4.4-1.454-4.4-1.022-2.2340.523-0.938-0.9380.7561.890.726
08-0.181-3.126-4.4-4.40.881-4.4-4.4-3.1262.199-2.584-1.454-3.1261.145-3.126-3.126-4.4
09-0.938-0.0080.1672.553-4.4-3.126-3.126-2.584-4.4-2.584-4.4-1.6-4.4-4.4-4.4-2.584
10-4.4-4.4-1.454-1.77-1.114-4.4-1.6-0.543-1.975-2.584-1.114-0.3460.293-0.7882.1850.92
11-1.454-2.5840.339-2.234-1.77-4.4-2.584-1.2150.8-0.861.5590.814-0.22-1.770.855-0.439
12-3.1260.5950.112-0.788-2.584-1.215-2.584-1.454-0.1441.4540.5040.578-0.7880.0230.167-0.439
13-1.6-0.302-1.114-1.770.5780.56-0.1081.093-0.144-0.1080.0830.167-1.3280.083-0.3020.023