Model info
| Transcription factor | Hoxa9 | ||||||||
| Model | HXA9_MOUSE.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dTGATTKAYdd | ||||||||
| Best auROC (human) | 0.883 | ||||||||
| Best auROC (mouse) | 0.757 | ||||||||
| Peak sets in benchmark (human) | 5 | ||||||||
| Peak sets in benchmark (mouse) | 8 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | HOX9-13 {3.1.1.8} | ||||||||
| MGI | MGI:96180 | ||||||||
| EntrezGene | GeneID:15405 (SSTAR profile) | ||||||||
| UniProt ID | HXA9_MOUSE | ||||||||
| UniProt AC | P09631 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Hoxa9 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 230.0 | 53.0 | 117.0 | 100.0 |
| 02 | 84.0 | 4.0 | 23.0 | 389.0 |
| 03 | 53.0 | 5.0 | 420.0 | 22.0 |
| 04 | 477.25 | 10.25 | 4.25 | 8.25 |
| 05 | 14.25 | 4.25 | 14.25 | 467.25 |
| 06 | 22.25 | 0.25 | 20.25 | 457.25 |
| 07 | 19.25 | 34.25 | 63.25 | 383.25 |
| 08 | 463.25 | 9.25 | 23.25 | 4.25 |
| 09 | 16.25 | 76.25 | 22.25 | 385.25 |
| 10 | 97.25 | 19.25 | 237.25 | 146.25 |
| 11 | 138.25 | 30.25 | 246.25 | 85.25 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.604 | -0.841 | -0.065 | -0.22 |
| 02 | -0.392 | -3.126 | -1.64 | 1.127 |
| 03 | -0.841 | -2.961 | 1.203 | -1.681 |
| 04 | 1.331 | -2.372 | -3.082 | -2.558 |
| 05 | -2.08 | -3.082 | -2.08 | 1.31 |
| 06 | -1.671 | -4.251 | -1.759 | 1.288 |
| 07 | -1.806 | -1.263 | -0.669 | 1.112 |
| 08 | 1.301 | -2.461 | -1.63 | -3.082 |
| 09 | -1.961 | -0.486 | -1.671 | 1.117 |
| 10 | -0.248 | -1.806 | 0.635 | 0.155 |
| 11 | 0.1 | -1.381 | 0.672 | -0.377 |