We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHOXB13
(GeneCards)
ModelHXB13_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
0
ConsensusdKTTTATKRbnhddbh
Best auROC (human)0.887
Best auROC (mouse)
Peak sets in benchmark (human)9
Peak sets in benchmark (mouse)
Aligned words507
TF familyHOX-related factors {3.1.1}
TF subfamilyHOX9-13 {3.1.1.8}
HGNCHGNC:5112
EntrezGeneGeneID:10481
(SSTAR profile)
UniProt IDHXB13_HUMAN
UniProt ACQ92826
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 11.10866
0.0005 13.326260000000001
0.0001 17.40556
GTEx tissue expression atlas HOXB13 expression
ReMap ChIP-seq dataset list HOXB13 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
014.010.017.0123.010.02.03.044.08.01.09.064.017.08.013.0167.0
020.00.02.037.00.00.00.021.01.00.00.041.01.01.05.0391.0
030.00.00.02.00.00.00.01.00.00.00.07.02.09.00.0479.0
040.00.00.02.00.09.00.00.00.00.00.00.02.099.03.0385.0
052.00.00.00.0108.00.00.00.03.00.00.00.0386.00.00.01.0
063.022.01.0473.00.00.00.00.00.00.00.00.00.00.00.01.0
071.00.01.01.07.00.03.012.00.00.00.01.064.02.0121.0287.0
088.02.049.013.01.00.01.00.046.01.062.016.058.07.0189.047.0
092.017.076.018.00.04.06.00.012.0103.0125.061.04.07.054.011.0
101.010.05.02.043.043.01.044.066.062.069.064.022.032.014.022.0
1115.030.014.073.024.034.04.085.04.030.09.046.012.032.024.064.0
128.014.020.013.036.019.00.071.011.07.07.026.037.030.050.0151.0
1326.08.026.032.033.05.01.031.022.012.016.027.041.026.080.0114.0
149.022.028.063.05.020.05.021.018.020.013.072.037.027.070.070.0
1527.014.07.021.028.010.04.047.025.041.011.039.065.024.044.093.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.975-1.114-0.5991.361-1.114-2.584-2.2340.339-1.328-3.126-1.2150.711-0.599-1.328-0.861.666
02-4.4-4.4-2.5840.167-4.4-4.4-4.4-0.392-3.126-4.4-4.40.269-3.126-3.126-1.772.515
03-4.4-4.4-4.4-2.584-4.4-4.4-4.4-3.126-4.4-4.4-4.4-1.454-2.584-1.215-4.42.718
04-4.4-4.4-4.4-2.584-4.4-1.215-4.4-4.4-4.4-4.4-4.4-4.4-2.5841.145-2.2342.5
05-2.584-4.4-4.4-4.41.231-4.4-4.4-4.4-2.234-4.4-4.4-4.42.502-4.4-4.4-3.126
06-2.234-0.346-3.1262.706-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-3.126
07-3.126-4.4-3.126-3.126-1.454-4.4-2.234-0.938-4.4-4.4-4.4-3.1260.711-2.5841.3452.206
08-1.328-2.5840.445-0.86-3.126-4.4-3.126-4.40.383-3.1260.679-0.6580.613-1.4541.7890.404
09-2.584-0.5990.881-0.543-4.4-1.975-1.6-4.4-0.9381.1841.3770.663-1.975-1.4540.542-1.022
10-3.126-1.114-1.77-2.5840.3160.316-3.1260.3390.7410.6790.7850.711-0.3460.023-0.788-0.346
11-0.721-0.04-0.7880.841-0.260.083-1.9750.993-1.975-0.04-1.2150.383-0.9380.023-0.260.711
12-1.328-0.788-0.439-0.860.14-0.49-4.40.814-1.022-1.454-1.454-0.1810.167-0.040.4651.565
13-0.181-1.328-0.1810.0230.054-1.77-3.126-0.008-0.346-0.938-0.658-0.1440.269-0.1810.9321.285
14-1.215-0.346-0.1080.695-1.77-0.439-1.77-0.392-0.543-0.439-0.860.8280.167-0.1440.80.8
15-0.144-0.788-1.454-0.392-0.108-1.114-1.9750.404-0.220.269-1.0220.2190.726-0.260.3391.082