We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHOXB13
(GeneCards)
ModelHXB13_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusYTTTATdRvn
Best auROC (human)0.846
Best auROC (mouse)
Peak sets in benchmark (human)9
Peak sets in benchmark (mouse)
Aligned words500
TF familyHOX-related factors {3.1.1}
TF subfamilyHOX9-13 {3.1.1.8}
HGNCHGNC:5112
EntrezGeneGeneID:10481
(SSTAR profile)
UniProt IDHXB13_HUMAN
UniProt ACQ92826
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.67822
0.0005 6.529845
0.0001 8.210155
GTEx tissue expression atlas HOXB13 expression
ReMap ChIP-seq dataset list HOXB13 datasets
Motifs in JASPAR
PCM
ACGT
0134.054.050.0362.0
025.03.09.0483.0
030.02.01.0497.0
047.012.013.0468.0
05472.011.017.00.0
0612.050.01.0437.0
07131.05.0162.0202.0
08125.04.0328.043.0
0951.0165.0250.034.0
1096.0192.084.0128.0
PWM
ACGT
01-1.27-0.823-0.8981.055
02-2.961-3.325-2.4841.343
03-4.4-3.573-3.9031.371
04-2.694-2.234-2.1631.311
051.32-2.311-1.92-4.4
06-2.234-0.898-3.9031.243
070.046-2.9610.2560.475
080.0-3.1260.957-1.044
09-0.8790.2750.687-1.27
10-0.260.425-0.3920.023