Transcription factor | HOXB13 (GeneCards) | ||||||||
Model | HXB13_HUMAN.H11MO.0.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 10 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | YTTTATdRvn | ||||||||
Best auROC (human) | 0.846 | ||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | 9 | ||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 500 | ||||||||
TF family | HOX-related factors {3.1.1} | ||||||||
TF subfamily | HOX9-13 {3.1.1.8} | ||||||||
HGNC | HGNC:5112 | ||||||||
EntrezGene | GeneID:10481 (SSTAR profile) | ||||||||
UniProt ID | HXB13_HUMAN | ||||||||
UniProt AC | Q92826 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | HOXB13 expression | ||||||||
ReMap ChIP-seq dataset list | HOXB13 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 34.0 | 54.0 | 50.0 | 362.0 |
02 | 5.0 | 3.0 | 9.0 | 483.0 |
03 | 0.0 | 2.0 | 1.0 | 497.0 |
04 | 7.0 | 12.0 | 13.0 | 468.0 |
05 | 472.0 | 11.0 | 17.0 | 0.0 |
06 | 12.0 | 50.0 | 1.0 | 437.0 |
07 | 131.0 | 5.0 | 162.0 | 202.0 |
08 | 125.0 | 4.0 | 328.0 | 43.0 |
09 | 51.0 | 165.0 | 250.0 | 34.0 |
10 | 96.0 | 192.0 | 84.0 | 128.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -1.27 | -0.823 | -0.898 | 1.055 |
02 | -2.961 | -3.325 | -2.484 | 1.343 |
03 | -4.4 | -3.573 | -3.903 | 1.371 |
04 | -2.694 | -2.234 | -2.163 | 1.311 |
05 | 1.32 | -2.311 | -1.92 | -4.4 |
06 | -2.234 | -0.898 | -3.903 | 1.243 |
07 | 0.046 | -2.961 | 0.256 | 0.475 |
08 | 0.0 | -3.126 | 0.957 | -1.044 |
09 | -0.879 | 0.275 | 0.687 | -1.27 |
10 | -0.26 | 0.425 | -0.392 | 0.023 |