We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHOXB1
(GeneCards)
ModelHXB1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length10
Quality
D
Motif rank
0
ConsensusWGATGGATGG
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words15
TF familyHOX-related factors {3.1.1}
TF subfamilyHOX1 {3.1.1.1}
HGNCHGNC:5111
EntrezGeneGeneID:3211
(SSTAR profile)
UniProt IDHXB1_HUMAN
UniProt ACP14653
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.85384
0.0005 5.5305599999999995
0.0001 7.8111950000000006
GTEx tissue expression atlas HOXB1 expression
ReMap ChIP-seq dataset list HOXB1 datasets
Motifs in JASPAR
PCM
ACGT
014.5710.01.0169.254
020.00.014.840.0
0314.840.00.00.0
040.00.00.014.84
050.00.09.2545.586
060.00.014.840.0
0714.840.00.00.0
080.00.00.014.84
090.02.53912.3010.0
101.0161.01612.8090.0
PWM
ACGT
010.179-1.872-0.9530.817
02-1.872-1.8721.264-1.872
031.264-1.872-1.872-1.872
04-1.872-1.872-1.8721.264
05-1.872-1.8720.8170.356
06-1.872-1.8721.264-1.872
071.264-1.872-1.872-1.872
08-1.872-1.872-1.8721.264
09-1.872-0.3111.085-1.872
10-0.953-0.9531.123-1.872