Model info
| Transcription factor | HOXB2 (GeneCards) | ||||||||
| Model | HXB2_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 15 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hvGAAbvTTCYAGAh | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 420 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | HOX2 {3.1.1.2} | ||||||||
| HGNC | HGNC:5113 | ||||||||
| EntrezGene | GeneID:3212 (SSTAR profile) | ||||||||
| UniProt ID | HXB2_HUMAN | ||||||||
| UniProt AC | P14652 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | HOXB2 expression | ||||||||
| ReMap ChIP-seq dataset list | HOXB2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 97.0 | 76.0 | 71.0 | 176.0 |
| 02 | 226.0 | 74.0 | 98.0 | 22.0 |
| 03 | 28.25 | 5.25 | 375.25 | 11.25 |
| 04 | 389.25 | 8.25 | 6.25 | 16.25 |
| 05 | 381.0 | 7.0 | 4.0 | 28.0 |
| 06 | 61.0 | 169.0 | 79.0 | 111.0 |
| 07 | 145.0 | 101.0 | 135.0 | 39.0 |
| 08 | 23.0 | 6.0 | 6.0 | 385.0 |
| 09 | 9.0 | 2.0 | 14.0 | 395.0 |
| 10 | 0.0 | 420.0 | 0.0 | 0.0 |
| 11 | 0.0 | 53.0 | 51.0 | 316.0 |
| 12 | 352.25 | 25.25 | 39.25 | 3.25 |
| 13 | 3.25 | 0.25 | 416.25 | 0.25 |
| 14 | 397.25 | 10.25 | 3.25 | 9.25 |
| 15 | 201.5 | 69.5 | 68.5 | 80.5 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.078 | -0.318 | -0.385 | 0.511 |
| 02 | 0.759 | -0.344 | -0.068 | -1.511 |
| 03 | -1.275 | -2.757 | 1.263 | -2.122 |
| 04 | 1.3 | -2.39 | -2.619 | -1.791 |
| 05 | 1.279 | -2.527 | -2.962 | -1.284 |
| 06 | -0.533 | 0.471 | -0.28 | 0.055 |
| 07 | 0.319 | -0.038 | 0.248 | -0.967 |
| 08 | -1.469 | -2.652 | -2.652 | 1.289 |
| 09 | -2.316 | -3.413 | -1.927 | 1.314 |
| 10 | -4.256 | 1.376 | -4.256 | -4.256 |
| 11 | -4.256 | -0.67 | -0.707 | 1.092 |
| 12 | 1.2 | -1.381 | -0.961 | -3.108 |
| 13 | -3.108 | -4.103 | 1.367 | -4.103 |
| 14 | 1.32 | -2.204 | -3.108 | -2.292 |
| 15 | 0.645 | -0.405 | -0.42 | -0.261 |