We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHOXB4
(GeneCards)
ModelHXB4_HUMAN.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
B
Motif rank
0
ConsensusWKRYWRATKRS
Best auROC (human)0.503
Best auROC (mouse)0.921
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)12
Aligned words503
TF familyHOX-related factors {3.1.1}
TF subfamilyHOX4 {3.1.1.4}
HGNCHGNC:5115
EntrezGeneGeneID:3214
(SSTAR profile)
UniProt IDHXB4_HUMAN
UniProt ACP17483
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.418925000000002
0.0005 11.839224999999999
0.0001 14.684895000000001
GTEx tissue expression atlas HOXB4 expression
ReMap ChIP-seq dataset list HOXB4 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0110.08.051.013.018.013.09.020.07.011.028.07.014.02.0256.033.0
0219.04.024.02.011.011.04.08.0294.027.018.05.027.013.027.06.0
039.092.018.0232.04.018.01.032.00.040.05.028.00.012.01.08.0
043.01.01.08.039.04.06.0113.03.01.01.020.039.02.055.0204.0
0567.01.015.01.06.00.02.00.019.00.044.00.0217.03.0111.014.0
06308.00.01.00.04.00.00.00.0172.00.00.00.015.00.00.00.0
070.08.02.0489.00.00.00.00.00.00.00.01.00.00.00.00.0
080.00.00.00.00.00.05.03.00.01.01.00.027.018.0328.0117.0
091.00.026.00.09.00.010.00.0151.011.0146.026.040.02.078.00.0
106.0113.074.08.01.06.01.05.011.0172.066.011.02.015.08.01.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.114-1.3280.485-0.86-0.543-0.86-1.215-0.439-1.454-1.022-0.108-1.454-0.788-2.5842.0920.054
02-0.49-1.975-0.26-2.584-1.022-1.022-1.975-1.3282.231-0.144-0.543-1.77-0.144-0.86-0.144-1.6
03-1.2151.072-0.5431.994-1.975-0.543-3.1260.023-4.40.244-1.77-0.108-4.4-0.938-3.126-1.328
04-2.234-3.126-3.126-1.3280.219-1.975-1.61.276-2.234-3.126-3.126-0.4390.219-2.5840.561.866
050.756-3.126-0.721-3.126-1.6-4.4-2.584-4.4-0.49-4.40.339-4.41.927-2.2341.259-0.788
062.277-4.4-3.126-4.4-1.975-4.4-4.4-4.41.695-4.4-4.4-4.4-0.721-4.4-4.4-4.4
07-4.4-1.328-2.5842.739-4.4-4.4-4.4-4.4-4.4-4.4-4.4-3.126-4.4-4.4-4.4-4.4
08-4.4-4.4-4.4-4.4-4.4-4.4-1.77-2.234-4.4-3.126-3.126-4.4-0.144-0.5432.341.311
09-3.126-4.4-0.181-4.4-1.215-4.4-1.114-4.41.565-1.0221.532-0.1810.244-2.5840.907-4.4
10-1.61.2760.855-1.328-3.126-1.6-3.126-1.77-1.0221.6950.741-1.022-2.584-0.721-1.328-3.126