We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHoxb4
ModelHXB4_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length8
Quality
A
Motif rank
0
ConsensusbTAATKRS
Best auROC (human)0.491
Best auROC (mouse)0.894
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)12
Aligned words502
TF familyHOX-related factors {3.1.1}
TF subfamilyHOX4 {3.1.1.4}
MGIMGI:96185
EntrezGeneGeneID:15412
(SSTAR profile)
UniProt IDHXB4_MOUSE
UniProt ACP10284
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.68436
0.0005 6.10181
0.0001 7.2669250000000005
GTEx tissue expression atlas Hoxb4 expression
Motifs in JASPAR
PCM
ACGT
0144.0192.045.0219.0
02112.01.013.0374.0
03386.09.0101.04.0
04496.00.03.01.0
050.013.00.0487.0
0615.020.0354.0111.0
07243.00.0252.05.0
089.0353.0129.09.0
PWM
ACGT
01-1.0220.425-1.00.555
02-0.108-3.903-2.1631.088
031.119-2.484-0.21-3.126
041.369-4.4-3.325-3.903
05-4.4-2.163-4.41.351
06-2.034-1.771.033-0.117
070.659-4.40.695-2.961
08-2.4841.030.031-2.484