Model info
| Transcription factor | Hoxb4 | ||||||||
| Model | HXB4_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 8 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bTAATKRS | ||||||||
| Best auROC (human) | 0.491 | ||||||||
| Best auROC (mouse) | 0.894 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 12 | ||||||||
| Aligned words | 502 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | HOX4 {3.1.1.4} | ||||||||
| MGI | MGI:96185 | ||||||||
| EntrezGene | GeneID:15412 (SSTAR profile) | ||||||||
| UniProt ID | HXB4_MOUSE | ||||||||
| UniProt AC | P10284 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Hoxb4 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 44.0 | 192.0 | 45.0 | 219.0 |
| 02 | 112.0 | 1.0 | 13.0 | 374.0 |
| 03 | 386.0 | 9.0 | 101.0 | 4.0 |
| 04 | 496.0 | 0.0 | 3.0 | 1.0 |
| 05 | 0.0 | 13.0 | 0.0 | 487.0 |
| 06 | 15.0 | 20.0 | 354.0 | 111.0 |
| 07 | 243.0 | 0.0 | 252.0 | 5.0 |
| 08 | 9.0 | 353.0 | 129.0 | 9.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.022 | 0.425 | -1.0 | 0.555 |
| 02 | -0.108 | -3.903 | -2.163 | 1.088 |
| 03 | 1.119 | -2.484 | -0.21 | -3.126 |
| 04 | 1.369 | -4.4 | -3.325 | -3.903 |
| 05 | -4.4 | -2.163 | -4.4 | 1.351 |
| 06 | -2.034 | -1.77 | 1.033 | -0.117 |
| 07 | 0.659 | -4.4 | 0.695 | -2.961 |
| 08 | -2.484 | 1.03 | 0.031 | -2.484 |