HXB7_HUMAN.H11MO.0.C motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

HOXB7
(GeneCards)

Model

HXB7_HUMAN.H11MO.0.C

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

Integrative

Model release

HOCOMOCOv9

Model length

10

Quality

C

Motif rank

0

Consensus

WTGATTRATK

Best auROC (human)

Best auROC (mouse)

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

Aligned words

28

TF family

HOX-related factors {3.1.1}

TF subfamily

HOX6-7 {3.1.1.6}

HGNC

EntrezGene

GeneID:3217
(SSTAR profile)

UniProt ID

UniProt AC

P09629
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	5.406445
0.0005	6.5460899999999995
0.0001	7.97335

GTEx tissue expression atlas

HOXB7 expression

ReMap ChIP-seq dataset list

Motifs in JASPAR

PCM

	A	C	G	T
01	8.121	0.253	1.152	18.462
02	0.0	0.0	0.0	27.988
03	2.023	0.0	25.965	0.0
04	27.988	0.0	0.0	0.0
05	0.0	0.0	0.0	27.988
06	0.0	0.0	0.0	27.988
07	13.151	0.0	9.105	5.733
08	27.089	0.899	0.0	0.0
09	0.0	1.911	0.0	26.078
10	2.529	1.517	15.174	8.767

PWM

	A	C	G	T
01	0.134	-1.976	-1.372	0.902
02	-2.241	-2.241	-2.241	1.303
03	-1.008	-2.241	1.23	-2.241
04	1.303	-2.241	-2.241	-2.241
05	-2.241	-2.241	-2.241	1.303
06	-2.241	-2.241	-2.241	1.303
07	0.58	-2.241	0.238	-0.176
08	1.271	-1.509	-2.241	-2.241
09	-2.241	-1.049	-2.241	1.235
10	-0.845	-1.203	0.715	0.204