Model info
| Transcription factor | HOXC10 (GeneCards) | ||||||||
| Model | HXC10_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 19 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | ddWWWddnndKTTWAYddb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 9418 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | HOX9-13 {3.1.1.8} | ||||||||
| HGNC | HGNC:5122 | ||||||||
| EntrezGene | GeneID:3226 (SSTAR profile) | ||||||||
| UniProt ID | HXC10_HUMAN | ||||||||
| UniProt AC | Q9NYD6 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | HOXC10 expression | ||||||||
| ReMap ChIP-seq dataset list | HOXC10 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2107.609 | 1461.307 | 1631.797 | 3779.569 |
| 02 | 2789.258 | 1026.422 | 1069.225 | 4095.377 |
| 03 | 3772.811 | 593.037 | 621.174 | 3993.261 |
| 04 | 3562.578 | 411.763 | 438.53 | 4567.411 |
| 05 | 3853.82 | 366.881 | 823.631 | 3935.951 |
| 06 | 4238.137 | 513.416 | 1437.374 | 2791.354 |
| 07 | 3689.316 | 1471.709 | 1757.919 | 2061.338 |
| 08 | 2655.424 | 1687.59 | 1948.69 | 2688.578 |
| 09 | 2275.175 | 1741.857 | 1940.532 | 3022.718 |
| 10 | 2219.997 | 1254.23 | 1811.278 | 3694.778 |
| 11 | 836.871 | 916.327 | 1118.028 | 6109.056 |
| 12 | 202.598 | 119.992 | 850.255 | 7807.437 |
| 13 | 5.316 | 118.424 | 75.783 | 8780.76 |
| 14 | 3323.482 | 147.606 | 128.209 | 5380.984 |
| 15 | 8868.382 | 41.359 | 69.882 | 0.66 |
| 16 | 360.086 | 1544.958 | 490.897 | 6584.342 |
| 17 | 1039.049 | 824.462 | 3533.366 | 3583.406 |
| 18 | 4236.673 | 806.406 | 2848.495 | 1088.708 |
| 19 | 1505.04 | 3832.295 | 1820.808 | 1822.14 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.063 | -0.429 | -0.319 | 0.52 |
| 02 | 0.217 | -0.781 | -0.741 | 0.601 |
| 03 | 0.519 | -1.328 | -1.282 | 0.575 |
| 04 | 0.461 | -1.692 | -1.629 | 0.71 |
| 05 | 0.54 | -1.806 | -1.001 | 0.561 |
| 06 | 0.635 | -1.472 | -0.445 | 0.218 |
| 07 | 0.496 | -0.422 | -0.244 | -0.085 |
| 08 | 0.168 | -0.285 | -0.141 | 0.18 |
| 09 | 0.013 | -0.253 | -0.146 | 0.297 |
| 10 | -0.011 | -0.581 | -0.214 | 0.498 |
| 11 | -0.985 | -0.895 | -0.696 | 1.0 |
| 12 | -2.395 | -2.911 | -0.969 | 1.246 |
| 13 | -5.69 | -2.924 | -3.36 | 1.363 |
| 14 | 0.392 | -2.708 | -2.846 | 0.874 |
| 15 | 1.373 | -3.942 | -3.439 | -6.641 |
| 16 | -1.825 | -0.373 | -1.517 | 1.075 |
| 17 | -0.769 | -1.0 | 0.453 | 0.467 |
| 18 | 0.635 | -1.022 | 0.238 | -0.723 |
| 19 | -0.399 | 0.534 | -0.209 | -0.208 |