Model info
| Transcription factor | HOXC11 (GeneCards) | ||||||||
| Model | HXC11_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dKTTWAYKRbh | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 318 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | HOX9-13 {3.1.1.8} | ||||||||
| HGNC | HGNC:5123 | ||||||||
| EntrezGene | GeneID:3227 (SSTAR profile) | ||||||||
| UniProt ID | HXC11_HUMAN | ||||||||
| UniProt AC | O43248 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | HOXC11 expression | ||||||||
| ReMap ChIP-seq dataset list | HOXC11 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 100.267 | 34.926 | 80.859 | 103.525 |
| 02 | 35.626 | 22.913 | 44.834 | 216.203 |
| 03 | 9.544 | 20.38 | 14.396 | 275.257 |
| 04 | 17.838 | 4.807 | 5.622 | 291.309 |
| 05 | 116.219 | 6.436 | 1.018 | 195.903 |
| 06 | 310.652 | 3.258 | 0.0 | 5.666 |
| 07 | 1.629 | 202.815 | 7.827 | 107.305 |
| 08 | 9.88 | 13.103 | 244.817 | 51.775 |
| 09 | 236.956 | 9.349 | 46.64 | 26.631 |
| 10 | 22.727 | 177.131 | 46.738 | 72.98 |
| 11 | 55.592 | 124.364 | 49.926 | 89.695 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.224 | -0.805 | 0.012 | 0.255 |
| 02 | -0.786 | -1.206 | -0.564 | 0.984 |
| 03 | -2.002 | -1.316 | -1.636 | 1.224 |
| 04 | -1.44 | -2.566 | -2.444 | 1.281 |
| 05 | 0.369 | -2.335 | -3.499 | 0.886 |
| 06 | 1.345 | -2.851 | -4.033 | -2.437 |
| 07 | -3.277 | 0.921 | -2.172 | 0.29 |
| 08 | -1.972 | -1.721 | 1.108 | -0.424 |
| 09 | 1.075 | -2.02 | -0.526 | -1.064 |
| 10 | -1.214 | 0.786 | -0.524 | -0.089 |
| 11 | -0.355 | 0.436 | -0.46 | 0.114 |