We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHOXC11
(GeneCards)
ModelHXC11_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensusdKTTWAYKRbh
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words318
TF familyHOX-related factors {3.1.1}
TF subfamilyHOX9-13 {3.1.1.8}
HGNCHGNC:5123
EntrezGeneGeneID:3227
(SSTAR profile)
UniProt IDHXC11_HUMAN
UniProt ACO43248
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.191084999999999
0.0005 5.884565
0.0001 7.3014399999999995
GTEx tissue expression atlas HOXC11 expression
ReMap ChIP-seq dataset list HOXC11 datasets
Motifs in JASPAR
PCM
ACGT
01100.26734.92680.859103.525
0235.62622.91344.834216.203
039.54420.3814.396275.257
0417.8384.8075.622291.309
05116.2196.4361.018195.903
06310.6523.2580.05.666
071.629202.8157.827107.305
089.8813.103244.81751.775
09236.9569.34946.6426.631
1022.727177.13146.73872.98
1155.592124.36449.92689.695
PWM
ACGT
010.224-0.8050.0120.255
02-0.786-1.206-0.5640.984
03-2.002-1.316-1.6361.224
04-1.44-2.566-2.4441.281
050.369-2.335-3.4990.886
061.345-2.851-4.033-2.437
07-3.2770.921-2.1720.29
08-1.972-1.7211.108-0.424
091.075-2.02-0.526-1.064
10-1.2140.786-0.524-0.089
11-0.3550.436-0.460.114