We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHOXC12
(GeneCards)
ModelHXC12_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length12
Quality
D
Motif rank
0
ConsensusdWTTTAYKRYbb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words2466
TF familyHOX-related factors {3.1.1}
TF subfamilyHOX9-13 {3.1.1.8}
HGNCHGNC:5124
EntrezGeneGeneID:3228
(SSTAR profile)
UniProt IDHXC12_HUMAN
UniProt ACP31275
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.36941
0.0005 6.3203700000000005
0.0001 8.04429
GTEx tissue expression atlas HOXC12 expression
ReMap ChIP-seq dataset list HOXC12 datasets
Motifs in JASPAR
PCM
ACGT
01742.75285.75546.75889.75
02279.25143.25251.251791.25
0339.520.525.52379.5
0430.756.756.752420.75
05353.04.022.02086.0
062453.01.02.09.0
075.01207.015.01238.0
0890.0108.01343.0924.0
091819.075.0457.0114.0
10135.01467.0328.0535.0
11384.0880.0402.0799.0
12409.5464.5465.51125.5
PWM
ACGT
010.186-0.765-0.1190.366
02-0.788-1.449-0.8931.065
03-2.702-3.315-3.1141.349
04-2.939-4.263-4.2631.366
05-0.555-4.643-3.2511.217
061.379-5.344-5.052-4.033
07-4.4880.671-3.5960.696
08-1.906-1.7270.7770.404
091.08-2.084-0.298-1.674
10-1.5070.865-0.628-0.141
11-0.4710.355-0.4260.259
12-0.407-0.282-0.280.601