Model info
| Transcription factor | HOXC13 (GeneCards) | ||||||||
| Model | HXC13_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | ndTTTTACbvb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 1231 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | HOX9-13 {3.1.1.8} | ||||||||
| HGNC | HGNC:5125 | ||||||||
| EntrezGene | GeneID:3229 (SSTAR profile) | ||||||||
| UniProt ID | HXC13_HUMAN | ||||||||
| UniProt AC | P31276 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | HOXC13 expression | ||||||||
| ReMap ChIP-seq dataset list | HOXC13 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 412.75 | 197.75 | 226.75 | 393.75 |
| 02 | 330.0 | 121.0 | 334.0 | 446.0 |
| 03 | 78.75 | 53.75 | 56.75 | 1041.75 |
| 04 | 10.0 | 22.0 | 6.0 | 1193.0 |
| 05 | 2.0 | 12.0 | 4.0 | 1213.0 |
| 06 | 66.0 | 16.0 | 9.0 | 1140.0 |
| 07 | 1199.0 | 28.0 | 4.0 | 0.0 |
| 08 | 17.0 | 1003.0 | 11.0 | 200.0 |
| 09 | 183.0 | 197.0 | 563.0 | 288.0 |
| 10 | 626.25 | 191.25 | 224.25 | 189.25 |
| 11 | 182.0 | 226.0 | 628.0 | 195.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.292 | -0.439 | -0.303 | 0.245 |
| 02 | 0.069 | -0.925 | 0.081 | 0.369 |
| 03 | -1.346 | -1.718 | -1.666 | 1.215 |
| 04 | -3.269 | -2.566 | -3.684 | 1.351 |
| 05 | -4.406 | -3.112 | -3.981 | 1.367 |
| 06 | -1.519 | -2.857 | -3.357 | 1.305 |
| 07 | 1.356 | -2.341 | -3.981 | -5.159 |
| 08 | -2.802 | 1.177 | -3.187 | -0.428 |
| 09 | -0.516 | -0.443 | 0.601 | -0.066 |
| 10 | 0.708 | -0.472 | -0.314 | -0.483 |
| 11 | -0.521 | -0.307 | 0.71 | -0.453 |