We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHOXC13
(GeneCards)
ModelHXC13_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensusndTTTTACbvb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words1231
TF familyHOX-related factors {3.1.1}
TF subfamilyHOX9-13 {3.1.1.8}
HGNCHGNC:5125
EntrezGeneGeneID:3229
(SSTAR profile)
UniProt IDHXC13_HUMAN
UniProt ACP31276
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.407355
0.0005 6.400225000000001
0.0001 7.88678
GTEx tissue expression atlas HOXC13 expression
ReMap ChIP-seq dataset list HOXC13 datasets
Motifs in JASPAR
PCM
ACGT
01412.75197.75226.75393.75
02330.0121.0334.0446.0
0378.7553.7556.751041.75
0410.022.06.01193.0
052.012.04.01213.0
0666.016.09.01140.0
071199.028.04.00.0
0817.01003.011.0200.0
09183.0197.0563.0288.0
10626.25191.25224.25189.25
11182.0226.0628.0195.0
PWM
ACGT
010.292-0.439-0.3030.245
020.069-0.9250.0810.369
03-1.346-1.718-1.6661.215
04-3.269-2.566-3.6841.351
05-4.406-3.112-3.9811.367
06-1.519-2.857-3.3571.305
071.356-2.341-3.981-5.159
08-2.8021.177-3.187-0.428
09-0.516-0.4430.601-0.066
100.708-0.472-0.314-0.483
11-0.521-0.3070.71-0.453